Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03784 and ECD_03785 are separated by 10 nucleotides ECD_03785 and ECD_03786 are separated by 476 nucleotides
ECD_03784: ECD_03784 - putative PTS enzyme, IIB component/IIC component, at 3,997,502 to 3,998,953
_03784
ECD_03785: ECD_03785 - putative enzyme IIA component of PTS, at 3,998,964 to 3,999,410
_03785
ECD_03786: ECD_03786 - putative glycoporin, at 3,999,887 to 4,001,281
_03786
Position (kb)
3998
3999
4000 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3997.982 kb on - strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.118 kb on + strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.119 kb on - strand, within ECD_03784 at 3998.121 kb on + strand, within ECD_03784 at 3998.122 kb on - strand, within ECD_03784 at 3998.150 kb on - strand, within ECD_03784 at 3998.186 kb on + strand, within ECD_03784 at 3998.187 kb on - strand, within ECD_03784 at 3998.229 kb on + strand, within ECD_03784 at 3998.230 kb on - strand, within ECD_03784 at 3998.230 kb on - strand, within ECD_03784 at 3998.348 kb on - strand, within ECD_03784 at 3998.348 kb on - strand, within ECD_03784 at 3998.368 kb on + strand, within ECD_03784 at 3998.368 kb on + strand, within ECD_03784 at 3998.369 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.371 kb on - strand, within ECD_03784 at 3998.392 kb on + strand, within ECD_03784 at 3998.393 kb on - strand, within ECD_03784 at 3998.427 kb on - strand, within ECD_03784 at 3998.458 kb on + strand, within ECD_03784 at 3998.458 kb on + strand, within ECD_03784 at 3998.466 kb on + strand, within ECD_03784 at 3998.841 kb on - strand at 3998.845 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.892 kb on + strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.893 kb on - strand at 3998.935 kb on + strand at 3998.936 kb on - strand at 3998.939 kb on + strand at 3998.940 kb on - strand at 3998.940 kb on - strand at 3998.986 kb on - strand at 3999.184 kb on - strand, within ECD_03785 at 3999.187 kb on - strand, within ECD_03785 at 3999.399 kb on - strand at 3999.934 kb on + strand at 3999.934 kb on + strand at 4000.044 kb on + strand, within ECD_03786 at 4000.106 kb on - strand, within ECD_03786 at 4000.163 kb on - strand, within ECD_03786 at 4000.313 kb on - strand, within ECD_03786 at 4000.390 kb on + strand, within ECD_03786
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,997,982 - ECD_03784 0.33 +0.4 3,998,118 + ECD_03784 0.42 -1.4 3,998,118 + ECD_03784 0.42 +0.2 3,998,118 + ECD_03784 0.42 +0.0 3,998,118 + ECD_03784 0.42 +3.2 3,998,118 + ECD_03784 0.42 -0.0 3,998,118 + ECD_03784 0.42 -0.8 3,998,118 + ECD_03784 0.42 -0.5 3,998,119 - ECD_03784 0.42 +0.4 3,998,119 - ECD_03784 0.42 -0.0 3,998,119 - ECD_03784 0.42 +0.4 3,998,121 + ECD_03784 0.43 +0.1 3,998,122 - ECD_03784 0.43 +0.2 3,998,150 - ECD_03784 0.45 +0.6 3,998,186 + ECD_03784 0.47 +0.1 3,998,187 - ECD_03784 0.47 +0.0 3,998,229 + ECD_03784 0.50 -0.5 3,998,230 - ECD_03784 0.50 -0.2 3,998,230 - ECD_03784 0.50 +0.4 3,998,348 - ECD_03784 0.58 +0.4 3,998,348 - ECD_03784 0.58 +0.4 3,998,368 + ECD_03784 0.60 +0.6 3,998,368 + ECD_03784 0.60 -1.2 3,998,369 - ECD_03784 0.60 -0.7 3,998,371 - ECD_03784 0.60 +0.4 3,998,371 - ECD_03784 0.60 +0.4 3,998,371 - ECD_03784 0.60 +0.3 3,998,392 + ECD_03784 0.61 +0.1 3,998,393 - ECD_03784 0.61 -0.1 3,998,427 - ECD_03784 0.64 -0.3 3,998,458 + ECD_03784 0.66 -0.3 3,998,458 + ECD_03784 0.66 +1.2 3,998,466 + ECD_03784 0.66 +0.1 3,998,841 - +0.3 3,998,845 + -1.1 3,998,892 + -0.6 3,998,892 + +0.4 3,998,892 + -0.1 3,998,892 + -1.5 3,998,893 - +0.1 3,998,893 - -0.3 3,998,893 - +0.1 3,998,893 - -0.4 3,998,935 + -0.6 3,998,936 - +0.9 3,998,939 + +0.5 3,998,940 - -0.0 3,998,940 - -0.4 3,998,986 - -0.3 3,999,184 - ECD_03785 0.49 -0.5 3,999,187 - ECD_03785 0.50 -1.2 3,999,399 - +1.2 3,999,934 + +0.1 3,999,934 + +0.3 4,000,044 + ECD_03786 0.11 -0.4 4,000,106 - ECD_03786 0.16 +0.1 4,000,163 - ECD_03786 0.20 +0.3 4,000,313 - ECD_03786 0.31 +0.4 4,000,390 + ECD_03786 0.36 -0.9
Or see this region's nucleotide sequence