Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03521 and ECD_03522 are separated by 647 nucleotides ECD_03522 and ECD_03523 are separated by 53 nucleotides
ECD_03521: ECD_03521 - hypothetical protein, at 3,709,771 to 3,712,158
_03521
ECD_03522: ECD_03522 - Single-strand binding protein (SSB) (Helix-destabilizing protein), at 3,712,806 to 3,713,291
_03522
ECD_03523: ECD_03523 - TrbC-like protein, at 3,713,345 to 3,714,508
_03523
Position (kb)
3712
3713
3714 Strain fitness (log2 ratio)
-1
0
1 at 3711.806 kb on + strand, within ECD_03521 at 3711.831 kb on + strand, within ECD_03521 at 3711.841 kb on - strand, within ECD_03521 at 3711.841 kb on - strand, within ECD_03521 at 3711.847 kb on + strand, within ECD_03521 at 3711.848 kb on - strand, within ECD_03521 at 3712.020 kb on - strand at 3712.224 kb on - strand at 3712.380 kb on - strand at 3712.800 kb on + strand at 3712.873 kb on - strand, within ECD_03522 at 3712.873 kb on - strand, within ECD_03522 at 3712.873 kb on - strand, within ECD_03522 at 3713.006 kb on - strand, within ECD_03522 at 3713.040 kb on + strand, within ECD_03522 at 3713.040 kb on + strand, within ECD_03522 at 3713.041 kb on - strand, within ECD_03522 at 3713.280 kb on - strand at 3713.373 kb on + strand at 3713.512 kb on + strand, within ECD_03523 at 3713.633 kb on + strand, within ECD_03523 at 3713.634 kb on - strand, within ECD_03523 at 3713.773 kb on + strand, within ECD_03523 at 3713.927 kb on + strand, within ECD_03523 at 3713.927 kb on + strand, within ECD_03523 at 3713.927 kb on + strand, within ECD_03523 at 3713.927 kb on + strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.928 kb on - strand, within ECD_03523 at 3713.929 kb on + strand, within ECD_03523 at 3713.929 kb on + strand, within ECD_03523 at 3713.930 kb on - strand, within ECD_03523 at 3714.130 kb on + strand, within ECD_03523 at 3714.131 kb on - strand, within ECD_03523 at 3714.131 kb on - strand, within ECD_03523 at 3714.131 kb on - strand, within ECD_03523 at 3714.134 kb on + strand, within ECD_03523 at 3714.134 kb on + strand, within ECD_03523 at 3714.134 kb on + strand, within ECD_03523 at 3714.134 kb on + strand, within ECD_03523 at 3714.134 kb on + strand, within ECD_03523 at 3714.135 kb on - strand, within ECD_03523 at 3714.186 kb on - strand, within ECD_03523 at 3714.186 kb on - strand, within ECD_03523
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,711,806 + ECD_03521 0.85 +0.3 3,711,831 + ECD_03521 0.86 -0.1 3,711,841 - ECD_03521 0.87 -0.1 3,711,841 - ECD_03521 0.87 -0.2 3,711,847 + ECD_03521 0.87 +0.6 3,711,848 - ECD_03521 0.87 +0.6 3,712,020 - -0.3 3,712,224 - -0.2 3,712,380 - +0.1 3,712,800 + -0.1 3,712,873 - ECD_03522 0.14 -0.1 3,712,873 - ECD_03522 0.14 +0.2 3,712,873 - ECD_03522 0.14 +0.4 3,713,006 - ECD_03522 0.41 +1.3 3,713,040 + ECD_03522 0.48 +1.3 3,713,040 + ECD_03522 0.48 +0.0 3,713,041 - ECD_03522 0.48 +0.6 3,713,280 - -0.0 3,713,373 + +0.4 3,713,512 + ECD_03523 0.14 -0.3 3,713,633 + ECD_03523 0.25 -1.2 3,713,634 - ECD_03523 0.25 -0.2 3,713,773 + ECD_03523 0.37 +0.2 3,713,927 + ECD_03523 0.50 +1.0 3,713,927 + ECD_03523 0.50 +0.9 3,713,927 + ECD_03523 0.50 +0.5 3,713,927 + ECD_03523 0.50 -0.2 3,713,928 - ECD_03523 0.50 -0.2 3,713,928 - ECD_03523 0.50 -0.1 3,713,928 - ECD_03523 0.50 +0.5 3,713,928 - ECD_03523 0.50 +0.4 3,713,928 - ECD_03523 0.50 +0.5 3,713,928 - ECD_03523 0.50 -0.2 3,713,928 - ECD_03523 0.50 -0.2 3,713,928 - ECD_03523 0.50 +1.0 3,713,928 - ECD_03523 0.50 +0.4 3,713,928 - ECD_03523 0.50 -0.1 3,713,929 + ECD_03523 0.50 -0.1 3,713,929 + ECD_03523 0.50 -0.1 3,713,930 - ECD_03523 0.50 +0.8 3,714,130 + ECD_03523 0.67 +0.4 3,714,131 - ECD_03523 0.68 -0.2 3,714,131 - ECD_03523 0.68 -0.2 3,714,131 - ECD_03523 0.68 +0.4 3,714,134 + ECD_03523 0.68 +0.8 3,714,134 + ECD_03523 0.68 -0.2 3,714,134 + ECD_03523 0.68 +0.4 3,714,134 + ECD_03523 0.68 +1.1 3,714,134 + ECD_03523 0.68 -0.1 3,714,135 - ECD_03523 0.68 +0.4 3,714,186 - ECD_03523 0.72 -0.5 3,714,186 - ECD_03523 0.72 +0.9
Or see this region's nucleotide sequence