Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03505 and ECD_03506 are separated by 54 nucleotides ECD_03506 and ECD_03507 are separated by 18 nucleotides ECD_03507 and ECD_03508 are separated by 6 nucleotides ECD_03508 and ECD_03509 are separated by 5 nucleotides
ECD_03505: ECD_03505 - guanylate kinase, at 3,688,220 to 3,688,843
_03505
ECD_03506: ECD_03506 - RNA polymerase, omega subunit, at 3,688,898 to 3,689,173
_03506
ECD_03507: ECD_03507 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 3,689,192 to 3,691,300
_03507
ECD_03508: ECD_03508 - tRNA mG18-2'-O-methyltransferase, SAM-dependent, at 3,691,307 to 3,691,996
_03508
ECD_03509: ECD_03509 - ATP-dependent DNA helicase, at 3,692,002 to 3,694,083
_03509
Position (kb)
3689
3690
3691
3692 Strain fitness (log2 ratio)
-2
-1
0
1 at 3688.206 kb on + strand at 3688.893 kb on + strand at 3688.893 kb on + strand at 3688.897 kb on + strand at 3688.908 kb on + strand at 3689.040 kb on + strand, within ECD_03506 at 3689.040 kb on + strand, within ECD_03506 at 3689.152 kb on + strand at 3690.356 kb on + strand, within ECD_03507 at 3690.356 kb on + strand, within ECD_03507 at 3690.871 kb on + strand, within ECD_03507 at 3690.872 kb on - strand, within ECD_03507 at 3691.027 kb on + strand, within ECD_03507 at 3691.027 kb on + strand, within ECD_03507 at 3691.132 kb on + strand at 3691.150 kb on + strand at 3691.165 kb on + strand at 3691.190 kb on + strand at 3691.276 kb on + strand at 3691.277 kb on - strand at 3691.306 kb on + strand at 3691.306 kb on + strand at 3691.306 kb on + strand at 3691.306 kb on + strand at 3691.307 kb on - strand at 3691.440 kb on + strand, within ECD_03508 at 3691.440 kb on + strand, within ECD_03508 at 3691.508 kb on - strand, within ECD_03508 at 3691.817 kb on + strand, within ECD_03508 at 3691.975 kb on + strand at 3691.978 kb on + strand at 3691.979 kb on - strand at 3691.979 kb on - strand at 3691.994 kb on + strand at 3691.994 kb on + strand at 3692.018 kb on + strand at 3692.018 kb on + strand at 3692.064 kb on + strand at 3692.064 kb on + strand at 3692.065 kb on - strand at 3692.114 kb on + strand at 3692.115 kb on - strand at 3692.168 kb on + strand at 3692.168 kb on + strand at 3692.169 kb on - strand at 3692.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,688,206 + -0.1 3,688,893 + -0.8 3,688,893 + -1.4 3,688,897 + -0.5 3,688,908 + -0.9 3,689,040 + ECD_03506 0.51 -0.6 3,689,040 + ECD_03506 0.51 +0.5 3,689,152 + +0.5 3,690,356 + ECD_03507 0.55 +0.3 3,690,356 + ECD_03507 0.55 -0.8 3,690,871 + ECD_03507 0.80 -0.9 3,690,872 - ECD_03507 0.80 -0.4 3,691,027 + ECD_03507 0.87 -2.0 3,691,027 + ECD_03507 0.87 -2.1 3,691,132 + -1.7 3,691,150 + +0.4 3,691,165 + -0.3 3,691,190 + -0.3 3,691,276 + -0.4 3,691,277 - -0.1 3,691,306 + -1.1 3,691,306 + -0.5 3,691,306 + +0.1 3,691,306 + -0.7 3,691,307 - -0.7 3,691,440 + ECD_03508 0.19 -0.5 3,691,440 + ECD_03508 0.19 -0.6 3,691,508 - ECD_03508 0.29 -1.3 3,691,817 + ECD_03508 0.74 +0.5 3,691,975 + -0.4 3,691,978 + -1.4 3,691,979 - -1.0 3,691,979 - -1.5 3,691,994 + -0.2 3,691,994 + -0.8 3,692,018 + -0.1 3,692,018 + -0.2 3,692,064 + -0.7 3,692,064 + +0.4 3,692,065 - -1.4 3,692,114 + -0.2 3,692,115 - +0.2 3,692,168 + +1.2 3,692,168 + -0.4 3,692,169 - -1.1 3,692,182 + +0.6
Or see this region's nucleotide sequence