Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03496 and ECD_03497 overlap by 20 nucleotides ECD_03497 and ECD_03498 are separated by 106 nucleotides ECD_03498 and ECD_03499 are separated by 36 nucleotides ECD_03499 and ECD_03500 are separated by 65 nucleotides
ECD_03496: ECD_03496 - fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding, at 3,679,521 to 3,680,741
_03496
ECD_03497: ECD_03497 - deoxyuridinetriphosphatase, at 3,680,722 to 3,681,177
_03497
ECD_03498: ECD_03498 - nucleoid occlusion factor, anti-FtsZ division inhibitor, at 3,681,284 to 3,681,880
_03498
ECD_03499: ECD_03499 - orotate phosphoribosyltransferase, at 3,681,917 to 3,682,558
_03499
ECD_03500: ECD_03500 - ribonuclease PH, at 3,682,624 to 3,683,340
_03500
Position (kb)
3681
3682 Strain fitness (log2 ratio)
-2
-1
0
1 at 3681.182 kb on + strand at 3681.182 kb on + strand at 3681.182 kb on + strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.183 kb on - strand at 3681.202 kb on + strand at 3681.203 kb on - strand at 3681.208 kb on - strand at 3681.376 kb on + strand, within ECD_03498 at 3681.377 kb on - strand, within ECD_03498 at 3681.446 kb on - strand, within ECD_03498 at 3681.488 kb on - strand, within ECD_03498 at 3681.586 kb on + strand, within ECD_03498 at 3681.586 kb on + strand, within ECD_03498 at 3681.587 kb on - strand, within ECD_03498 at 3681.676 kb on + strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.788 kb on - strand, within ECD_03498 at 3681.817 kb on + strand, within ECD_03498 at 3681.881 kb on + strand at 3681.881 kb on + strand at 3681.881 kb on + strand at 3682.019 kb on - strand, within ECD_03499 at 3682.019 kb on - strand, within ECD_03499 at 3682.039 kb on - strand, within ECD_03499 at 3682.039 kb on - strand, within ECD_03499 at 3682.110 kb on - strand, within ECD_03499 at 3682.110 kb on - strand, within ECD_03499 at 3682.141 kb on + strand, within ECD_03499 at 3682.142 kb on - strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.190 kb on + strand, within ECD_03499 at 3682.191 kb on - strand, within ECD_03499 at 3682.191 kb on - strand, within ECD_03499 at 3682.200 kb on - strand, within ECD_03499 at 3682.200 kb on - strand, within ECD_03499 at 3682.211 kb on + strand, within ECD_03499 at 3682.345 kb on - strand, within ECD_03499 at 3682.345 kb on - strand, within ECD_03499 at 3682.402 kb on - strand, within ECD_03499 at 3682.435 kb on + strand, within ECD_03499 at 3682.461 kb on + strand, within ECD_03499 at 3682.461 kb on + strand, within ECD_03499 at 3682.462 kb on - strand, within ECD_03499 at 3682.584 kb on + strand at 3682.585 kb on - strand at 3682.655 kb on - strand at 3682.655 kb on - strand at 3682.700 kb on - strand, within ECD_03500 at 3682.775 kb on - strand, within ECD_03500 at 3682.775 kb on - strand, within ECD_03500 at 3682.811 kb on + strand, within ECD_03500 at 3682.812 kb on - strand, within ECD_03500 at 3682.841 kb on - strand, within ECD_03500 at 3682.841 kb on - strand, within ECD_03500
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,681,182 + -0.2 3,681,182 + -1.1 3,681,182 + +0.1 3,681,183 - -0.4 3,681,183 - -0.2 3,681,183 - -0.3 3,681,183 - -0.4 3,681,202 + -1.9 3,681,203 - +0.1 3,681,208 - -0.1 3,681,376 + ECD_03498 0.15 -1.0 3,681,377 - ECD_03498 0.16 -0.7 3,681,446 - ECD_03498 0.27 -0.8 3,681,488 - ECD_03498 0.34 -1.1 3,681,586 + ECD_03498 0.51 -0.6 3,681,586 + ECD_03498 0.51 +0.1 3,681,587 - ECD_03498 0.51 -0.2 3,681,676 + ECD_03498 0.66 -1.2 3,681,788 - ECD_03498 0.84 -0.5 3,681,788 - ECD_03498 0.84 +0.3 3,681,788 - ECD_03498 0.84 +0.5 3,681,817 + ECD_03498 0.89 -0.1 3,681,881 + -0.4 3,681,881 + -0.3 3,681,881 + -0.3 3,682,019 - ECD_03499 0.16 +0.6 3,682,019 - ECD_03499 0.16 -0.4 3,682,039 - ECD_03499 0.19 -0.3 3,682,039 - ECD_03499 0.19 -0.8 3,682,110 - ECD_03499 0.30 -1.2 3,682,110 - ECD_03499 0.30 -0.2 3,682,141 + ECD_03499 0.35 -1.6 3,682,142 - ECD_03499 0.35 -1.4 3,682,190 + ECD_03499 0.43 +1.5 3,682,190 + ECD_03499 0.43 -0.0 3,682,190 + ECD_03499 0.43 -0.3 3,682,191 - ECD_03499 0.43 -1.1 3,682,191 - ECD_03499 0.43 +0.5 3,682,200 - ECD_03499 0.44 -0.9 3,682,200 - ECD_03499 0.44 +0.2 3,682,211 + ECD_03499 0.46 -1.2 3,682,345 - ECD_03499 0.67 -0.1 3,682,345 - ECD_03499 0.67 -0.9 3,682,402 - ECD_03499 0.76 -1.0 3,682,435 + ECD_03499 0.81 -1.0 3,682,461 + ECD_03499 0.85 -1.7 3,682,461 + ECD_03499 0.85 -0.6 3,682,462 - ECD_03499 0.85 -1.7 3,682,584 + +0.2 3,682,585 - -0.1 3,682,655 - +0.5 3,682,655 - -0.7 3,682,700 - ECD_03500 0.11 -0.5 3,682,775 - ECD_03500 0.21 -0.3 3,682,775 - ECD_03500 0.21 -0.9 3,682,811 + ECD_03500 0.26 -0.1 3,682,812 - ECD_03500 0.26 +1.4 3,682,841 - ECD_03500 0.30 -0.0 3,682,841 - ECD_03500 0.30 +1.0
Or see this region's nucleotide sequence