Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03433 and ECD_03434 overlap by 8 nucleotides ECD_03434 and ECD_03435 overlap by 7 nucleotides ECD_03435 and ECD_03436 are separated by 31 nucleotides
ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391
_03433
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933
_03435
ECD_03436: ECD_03436 - putative regulatory protein, at 3,612,965 to 3,613,780
_03436
Position (kb)
3612
3613 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3611.367 kb on + strand at 3611.368 kb on - strand at 3611.368 kb on - strand at 3611.408 kb on + strand at 3611.409 kb on - strand at 3611.709 kb on + strand, within ECD_03434 at 3611.741 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.876 kb on - strand, within ECD_03434 at 3612.116 kb on - strand, within ECD_03434 at 3612.126 kb on - strand, within ECD_03434 at 3612.236 kb on - strand at 3612.237 kb on + strand at 3612.237 kb on + strand at 3612.238 kb on - strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.243 kb on - strand at 3612.332 kb on + strand, within ECD_03435 at 3612.356 kb on + strand, within ECD_03435 at 3612.357 kb on - strand, within ECD_03435 at 3612.430 kb on - strand, within ECD_03435 at 3612.430 kb on - strand, within ECD_03435 at 3612.488 kb on - strand, within ECD_03435 at 3612.522 kb on + strand, within ECD_03435 at 3612.792 kb on + strand, within ECD_03435 at 3612.800 kb on + strand, within ECD_03435 at 3612.801 kb on - strand, within ECD_03435 at 3612.801 kb on - strand, within ECD_03435 at 3612.820 kb on + strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.823 kb on - strand, within ECD_03435 at 3612.830 kb on + strand, within ECD_03435 at 3612.892 kb on + strand at 3612.893 kb on - strand at 3612.900 kb on + strand at 3612.919 kb on + strand at 3612.920 kb on - strand at 3612.922 kb on + strand at 3612.976 kb on + strand at 3612.977 kb on - strand at 3613.017 kb on - strand at 3613.051 kb on - strand, within ECD_03436 at 3613.215 kb on + strand, within ECD_03436 at 3613.478 kb on - strand, within ECD_03436 at 3613.595 kb on + strand, within ECD_03436 at 3613.626 kb on - strand, within ECD_03436 at 3613.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,611,367 + -0.2 3,611,368 - -0.0 3,611,368 - +0.6 3,611,408 + +0.8 3,611,409 - +0.5 3,611,709 + ECD_03434 0.38 +1.3 3,611,741 + ECD_03434 0.41 -0.2 3,611,875 + ECD_03434 0.57 +0.1 3,611,875 + ECD_03434 0.57 -0.3 3,611,876 - ECD_03434 0.57 -0.4 3,612,116 - ECD_03434 0.85 +0.0 3,612,126 - ECD_03434 0.86 -0.4 3,612,236 - -0.4 3,612,237 + -1.4 3,612,237 + -0.9 3,612,238 - -0.0 3,612,242 + -0.1 3,612,242 + +0.6 3,612,242 + -0.5 3,612,243 - +0.4 3,612,332 + ECD_03435 0.14 -0.0 3,612,356 + ECD_03435 0.17 -0.9 3,612,357 - ECD_03435 0.17 -0.8 3,612,430 - ECD_03435 0.28 -0.6 3,612,430 - ECD_03435 0.28 -0.7 3,612,488 - ECD_03435 0.36 -0.2 3,612,522 + ECD_03435 0.41 +0.2 3,612,792 + ECD_03435 0.80 -1.0 3,612,800 + ECD_03435 0.81 +0.2 3,612,801 - ECD_03435 0.81 +0.5 3,612,801 - ECD_03435 0.81 +1.0 3,612,820 + ECD_03435 0.84 -1.2 3,612,821 - ECD_03435 0.84 +0.1 3,612,821 - ECD_03435 0.84 -2.0 3,612,821 - ECD_03435 0.84 +0.3 3,612,821 - ECD_03435 0.84 +0.8 3,612,823 - ECD_03435 0.84 -0.2 3,612,830 + ECD_03435 0.85 +0.8 3,612,892 + +0.8 3,612,893 - -0.8 3,612,900 + +0.3 3,612,919 + -1.4 3,612,920 - +1.0 3,612,922 + -0.1 3,612,976 + -0.1 3,612,977 - +0.1 3,613,017 - -0.4 3,613,051 - ECD_03436 0.11 -2.9 3,613,215 + ECD_03436 0.31 +0.2 3,613,478 - ECD_03436 0.63 +0.9 3,613,595 + ECD_03436 0.77 +0.6 3,613,626 - ECD_03436 0.81 +0.1 3,613,784 + -0.2
Or see this region's nucleotide sequence