Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03353 and ECD_03354 are separated by 247 nucleotides ECD_03354 and ECD_03355 are separated by 155 nucleotides ECD_03355 and ECD_03356 are separated by 41 nucleotides
ECD_03353: ECD_03353 - hypothetical protein, at 3,513,677 to 3,514,900
_03353
ECD_03354: ECD_03354 - outer membrane lipoprotein, at 3,515,148 to 3,515,714
_03354
ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400
_03355
ECD_03356: ECD_03356 - putative Mg(2+) transport ATPase, inner membrane protein, at 3,516,442 to 3,517,089
_03356
Position (kb)
3515
3516 Strain fitness (log2 ratio)
-1
0
1
2 at 3514.610 kb on + strand, within ECD_03353 at 3514.728 kb on - strand, within ECD_03353 at 3514.970 kb on + strand at 3515.288 kb on - strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.359 kb on + strand, within ECD_03354 at 3515.371 kb on + strand, within ECD_03354 at 3515.372 kb on - strand, within ECD_03354 at 3515.385 kb on - strand, within ECD_03354 at 3515.389 kb on - strand, within ECD_03354 at 3515.402 kb on + strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.523 kb on - strand, within ECD_03354 at 3515.528 kb on + strand, within ECD_03354 at 3515.538 kb on + strand, within ECD_03354 at 3515.539 kb on - strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.558 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.608 kb on - strand, within ECD_03354 at 3515.671 kb on - strand at 3515.775 kb on - strand at 3516.145 kb on + strand, within ECD_03355 at 3516.369 kb on + strand at 3516.383 kb on - strand at 3516.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,514,610 + ECD_03353 0.76 -0.2 3,514,728 - ECD_03353 0.86 +0.3 3,514,970 + +1.2 3,515,288 - ECD_03354 0.25 +0.5 3,515,289 + ECD_03354 0.25 +1.4 3,515,289 + ECD_03354 0.25 +1.5 3,515,289 + ECD_03354 0.25 +0.2 3,515,289 + ECD_03354 0.25 +0.4 3,515,289 + ECD_03354 0.25 +0.1 3,515,359 + ECD_03354 0.37 -0.1 3,515,371 + ECD_03354 0.39 +0.5 3,515,372 - ECD_03354 0.40 +0.4 3,515,385 - ECD_03354 0.42 +0.8 3,515,389 - ECD_03354 0.43 -0.0 3,515,402 + ECD_03354 0.45 +0.4 3,515,416 - ECD_03354 0.47 +0.2 3,515,416 - ECD_03354 0.47 +0.2 3,515,523 - ECD_03354 0.66 +2.1 3,515,528 + ECD_03354 0.67 -0.1 3,515,538 + ECD_03354 0.69 +0.5 3,515,539 - ECD_03354 0.69 +0.3 3,515,540 + ECD_03354 0.69 +0.9 3,515,540 + ECD_03354 0.69 -0.4 3,515,540 + ECD_03354 0.69 +0.5 3,515,558 + ECD_03354 0.72 +0.2 3,515,607 + ECD_03354 0.81 -1.3 3,515,607 + ECD_03354 0.81 +0.3 3,515,607 + ECD_03354 0.81 +0.5 3,515,608 - ECD_03354 0.81 -0.5 3,515,671 - -0.3 3,515,775 - +0.6 3,516,145 + ECD_03355 0.52 +0.4 3,516,369 + -0.4 3,516,383 - +0.2 3,516,447 + +0.4
Or see this region's nucleotide sequence