Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03319 and ECD_03320 are separated by 220 nucleotides ECD_03320 and ECD_03321 are separated by 72 nucleotides ECD_03321 and ECD_03322 are separated by 3 nucleotides
ECD_03319: ECD_03319 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 3,471,135 to 3,471,380
_03319
ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266
_03320
ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896
_03321
ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117
_03322
Position (kb)
3472
3473 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3471.410 kb on + strand at 3471.416 kb on - strand at 3471.484 kb on + strand at 3471.484 kb on + strand at 3471.492 kb on + strand at 3471.530 kb on + strand at 3471.530 kb on + strand at 3471.530 kb on + strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.540 kb on + strand at 3471.554 kb on + strand at 3471.554 kb on + strand at 3471.555 kb on - strand at 3471.555 kb on - strand at 3471.555 kb on - strand at 3471.558 kb on + strand at 3471.559 kb on - strand at 3471.559 kb on - strand at 3471.600 kb on + strand at 3471.600 kb on + strand at 3471.682 kb on - strand, within ECD_03320 at 3471.685 kb on + strand, within ECD_03320 at 3471.686 kb on - strand, within ECD_03320 at 3471.686 kb on - strand, within ECD_03320 at 3471.810 kb on + strand, within ECD_03320 at 3471.850 kb on + strand, within ECD_03320 at 3471.851 kb on - strand, within ECD_03320 at 3471.851 kb on - strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.874 kb on - strand, within ECD_03320 at 3471.955 kb on + strand, within ECD_03320 at 3472.110 kb on + strand, within ECD_03320 at 3472.192 kb on + strand, within ECD_03320 at 3472.193 kb on - strand, within ECD_03320 at 3472.209 kb on + strand at 3472.209 kb on + strand at 3472.210 kb on - strand at 3472.289 kb on + strand at 3472.353 kb on + strand at 3472.358 kb on - strand at 3472.358 kb on - strand at 3472.447 kb on - strand, within ECD_03321 at 3472.509 kb on + strand, within ECD_03321 at 3472.548 kb on + strand, within ECD_03321 at 3472.549 kb on - strand, within ECD_03321 at 3472.695 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.744 kb on - strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.878 kb on + strand at 3472.963 kb on + strand at 3472.964 kb on - strand at 3473.001 kb on - strand at 3473.074 kb on - strand, within ECD_03322 at 3473.077 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.182 kb on + strand, within ECD_03322 at 3473.243 kb on - strand, within ECD_03322 at 3473.309 kb on - strand, within ECD_03322 at 3473.337 kb on + strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.377 kb on - strand, within ECD_03322 at 3473.384 kb on + strand, within ECD_03322 at 3473.451 kb on - strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.770 kb on + strand, within ECD_03322 at 3473.773 kb on + strand, within ECD_03322 at 3473.848 kb on + strand, within ECD_03322 at 3473.849 kb on - strand, within ECD_03322
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,471,410 + -0.1 3,471,416 - +0.5 3,471,484 + -0.2 3,471,484 + +0.2 3,471,492 + -0.6 3,471,530 + -0.4 3,471,530 + +3.1 3,471,530 + -0.1 3,471,531 - +0.5 3,471,531 - -0.9 3,471,531 - -0.3 3,471,531 - +0.0 3,471,531 - -0.1 3,471,531 - +0.1 3,471,531 - +0.1 3,471,531 - +0.3 3,471,540 + -0.3 3,471,554 + +0.6 3,471,554 + +0.4 3,471,555 - +0.4 3,471,555 - -0.7 3,471,555 - +0.6 3,471,558 + -0.1 3,471,559 - -0.3 3,471,559 - -0.1 3,471,600 + -0.4 3,471,600 + +0.1 3,471,682 - ECD_03320 0.12 +0.1 3,471,685 + ECD_03320 0.13 -0.1 3,471,686 - ECD_03320 0.13 +1.3 3,471,686 - ECD_03320 0.13 +0.1 3,471,810 + ECD_03320 0.31 +0.9 3,471,850 + ECD_03320 0.37 -0.2 3,471,851 - ECD_03320 0.38 +0.2 3,471,851 - ECD_03320 0.38 +0.3 3,471,871 + ECD_03320 0.41 -0.1 3,471,871 + ECD_03320 0.41 +1.3 3,471,871 + ECD_03320 0.41 +0.0 3,471,872 - ECD_03320 0.41 +0.4 3,471,872 - ECD_03320 0.41 +0.2 3,471,872 - ECD_03320 0.41 +0.5 3,471,872 - ECD_03320 0.41 +0.5 3,471,872 - ECD_03320 0.41 -0.5 3,471,872 - ECD_03320 0.41 -0.3 3,471,872 - ECD_03320 0.41 +0.0 3,471,872 - ECD_03320 0.41 -0.5 3,471,872 - ECD_03320 0.41 +0.2 3,471,872 - ECD_03320 0.41 -0.0 3,471,874 - ECD_03320 0.41 +0.2 3,471,955 + ECD_03320 0.53 +0.3 3,472,110 + ECD_03320 0.76 -0.5 3,472,192 + ECD_03320 0.89 +0.6 3,472,193 - ECD_03320 0.89 -0.1 3,472,209 + -0.9 3,472,209 + +0.0 3,472,210 - +0.3 3,472,289 + -0.2 3,472,353 + -0.1 3,472,358 - +0.0 3,472,358 - +0.5 3,472,447 - ECD_03321 0.19 +0.3 3,472,509 + ECD_03321 0.30 -0.3 3,472,548 + ECD_03321 0.37 +0.6 3,472,549 - ECD_03321 0.38 -1.3 3,472,695 + ECD_03321 0.64 -0.2 3,472,740 + ECD_03321 0.72 -0.4 3,472,740 + ECD_03321 0.72 +1.1 3,472,740 + ECD_03321 0.72 -0.8 3,472,740 + ECD_03321 0.72 -0.2 3,472,741 - ECD_03321 0.72 +0.6 3,472,741 - ECD_03321 0.72 -0.2 3,472,741 - ECD_03321 0.72 -0.2 3,472,743 + ECD_03321 0.72 +0.4 3,472,743 + ECD_03321 0.72 +0.0 3,472,744 - ECD_03321 0.73 -0.4 3,472,768 + ECD_03321 0.77 -0.3 3,472,768 + ECD_03321 0.77 +0.3 3,472,875 + -0.9 3,472,875 + +1.5 3,472,875 + +0.7 3,472,875 + +0.1 3,472,878 + -0.1 3,472,963 + +0.2 3,472,964 - -0.0 3,473,001 - +0.2 3,473,074 - ECD_03322 0.14 -0.2 3,473,077 + ECD_03322 0.15 -0.1 3,473,084 + ECD_03322 0.15 +0.9 3,473,084 + ECD_03322 0.15 -0.7 3,473,084 + ECD_03322 0.15 +0.1 3,473,085 - ECD_03322 0.15 -1.4 3,473,085 - ECD_03322 0.15 -0.1 3,473,085 - ECD_03322 0.15 -0.2 3,473,182 + ECD_03322 0.23 -0.1 3,473,243 - ECD_03322 0.28 -0.4 3,473,309 - ECD_03322 0.34 -0.0 3,473,337 + ECD_03322 0.36 -0.6 3,473,338 - ECD_03322 0.36 -0.4 3,473,338 - ECD_03322 0.36 +0.3 3,473,338 - ECD_03322 0.36 +0.6 3,473,338 - ECD_03322 0.36 +0.2 3,473,377 - ECD_03322 0.39 +0.3 3,473,384 + ECD_03322 0.40 +0.2 3,473,451 - ECD_03322 0.45 -0.2 3,473,597 + ECD_03322 0.57 +0.4 3,473,597 + ECD_03322 0.57 -0.9 3,473,640 - ECD_03322 0.61 +0.4 3,473,640 - ECD_03322 0.61 -0.6 3,473,770 + ECD_03322 0.71 -0.2 3,473,773 + ECD_03322 0.72 -0.5 3,473,848 + ECD_03322 0.78 +0.7 3,473,849 - ECD_03322 0.78 -0.1
Or see this region's nucleotide sequence