Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03291 and ECD_03292 are separated by 332 nucleotides ECD_03292 and ECD_03293 are separated by 236 nucleotides
ECD_03291: ECD_03291 - putative oxidoreductase, at 3,442,917 to 3,443,954
_03291
ECD_03292: ECD_03292 - aminoacyl nucleotide detoxifying acetyltransferase, at 3,444,287 to 3,444,775
_03292
ECD_03293: ECD_03293 - putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity, at 3,445,012 to 3,446,190
_03293
Position (kb)
3444
3445 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3443.406 kb on - strand, within ECD_03291 at 3443.420 kb on + strand, within ECD_03291 at 3443.421 kb on - strand, within ECD_03291 at 3443.437 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.776 kb on - strand, within ECD_03291 at 3443.873 kb on + strand at 3443.889 kb on + strand at 3443.889 kb on + strand at 3443.889 kb on + strand at 3443.890 kb on - strand at 3443.890 kb on - strand at 3443.890 kb on - strand at 3443.894 kb on - strand at 3443.894 kb on - strand at 3443.894 kb on - strand at 3443.933 kb on + strand at 3443.969 kb on + strand at 3443.970 kb on - strand at 3443.982 kb on + strand at 3443.989 kb on + strand at 3444.052 kb on - strand at 3444.101 kb on + strand at 3444.101 kb on + strand at 3444.102 kb on - strand at 3444.102 kb on - strand at 3444.173 kb on + strand at 3444.266 kb on + strand at 3444.298 kb on - strand at 3444.298 kb on - strand at 3444.298 kb on - strand at 3444.301 kb on - strand at 3444.301 kb on - strand at 3444.304 kb on - strand at 3444.304 kb on - strand at 3444.365 kb on + strand, within ECD_03292 at 3444.365 kb on + strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.378 kb on + strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.458 kb on - strand, within ECD_03292 at 3444.536 kb on - strand, within ECD_03292 at 3444.624 kb on + strand, within ECD_03292 at 3444.640 kb on - strand, within ECD_03292 at 3444.670 kb on + strand, within ECD_03292 at 3444.679 kb on + strand, within ECD_03292 at 3444.713 kb on - strand, within ECD_03292 at 3444.740 kb on + strand at 3444.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,443,406 - ECD_03291 0.47 +0.4 3,443,420 + ECD_03291 0.48 -0.8 3,443,421 - ECD_03291 0.49 -0.2 3,443,437 + ECD_03291 0.50 -0.2 3,443,775 + ECD_03291 0.83 +0.5 3,443,775 + ECD_03291 0.83 -0.5 3,443,775 + ECD_03291 0.83 -0.8 3,443,776 - ECD_03291 0.83 -0.2 3,443,873 + -0.1 3,443,889 + -0.5 3,443,889 + +0.8 3,443,889 + +0.5 3,443,890 - +0.8 3,443,890 - -0.2 3,443,890 - -0.1 3,443,894 - -0.9 3,443,894 - +0.5 3,443,894 - +1.5 3,443,933 + -0.6 3,443,969 + +0.8 3,443,970 - -0.8 3,443,982 + -0.7 3,443,989 + -0.2 3,444,052 - +0.2 3,444,101 + +0.2 3,444,101 + -0.3 3,444,102 - +0.3 3,444,102 - -0.6 3,444,173 + -3.1 3,444,266 + -0.6 3,444,298 - +0.0 3,444,298 - +0.4 3,444,298 - +0.2 3,444,301 - +0.3 3,444,301 - +0.3 3,444,304 - +0.2 3,444,304 - -0.1 3,444,365 + ECD_03292 0.16 +0.5 3,444,365 + ECD_03292 0.16 -0.8 3,444,366 - ECD_03292 0.16 +0.9 3,444,366 - ECD_03292 0.16 +0.1 3,444,366 - ECD_03292 0.16 +0.1 3,444,366 - ECD_03292 0.16 -0.4 3,444,378 + ECD_03292 0.19 +0.0 3,444,379 - ECD_03292 0.19 -0.0 3,444,379 - ECD_03292 0.19 -0.0 3,444,379 - ECD_03292 0.19 -0.1 3,444,403 + ECD_03292 0.24 -0.2 3,444,403 + ECD_03292 0.24 +1.3 3,444,403 + ECD_03292 0.24 -0.1 3,444,403 + ECD_03292 0.24 +0.7 3,444,403 + ECD_03292 0.24 +0.4 3,444,404 - ECD_03292 0.24 +0.6 3,444,404 - ECD_03292 0.24 +0.4 3,444,404 - ECD_03292 0.24 +0.7 3,444,404 - ECD_03292 0.24 +0.5 3,444,404 - ECD_03292 0.24 +0.2 3,444,458 - ECD_03292 0.35 -0.9 3,444,536 - ECD_03292 0.51 -0.3 3,444,624 + ECD_03292 0.69 +0.1 3,444,640 - ECD_03292 0.72 -0.3 3,444,670 + ECD_03292 0.78 +0.3 3,444,679 + ECD_03292 0.80 +0.2 3,444,713 - ECD_03292 0.87 -0.1 3,444,740 + -0.2 3,444,740 + +0.2
Or see this region's nucleotide sequence