Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03284 and ECD_03285 are separated by 272 nucleotides ECD_03285 and ECD_03286 are separated by 191 nucleotides ECD_03286 and ECD_03287 are separated by 56 nucleotides
ECD_03284: ECD_03284 - 1,4-alpha-glucan branching enzyme, at 3,434,466 to 3,436,652
_03284
ECD_03285: ECD_03285 - aspartate-semialdehyde dehydrogenase, NAD(P)-binding, at 3,436,925 to 3,438,028
_03285
ECD_03286: ECD_03286 - UPF0056 family inner membrane protein, at 3,438,220 to 3,438,813
_03286
ECD_03287: ECD_03287 - gluconate transporter, low affinity GNT 1 system, at 3,438,870 to 3,440,210
_03287
Position (kb)
3436
3437
3438
3439 Strain fitness (log2 ratio)
-1
0
1 at 3435.969 kb on + strand, within ECD_03284 at 3435.970 kb on - strand, within ECD_03284 at 3435.996 kb on - strand, within ECD_03284 at 3436.085 kb on - strand, within ECD_03284 at 3436.085 kb on - strand, within ECD_03284 at 3436.089 kb on - strand, within ECD_03284 at 3436.089 kb on - strand, within ECD_03284 at 3436.104 kb on - strand, within ECD_03284 at 3436.260 kb on - strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.305 kb on - strand, within ECD_03284 at 3436.305 kb on - strand, within ECD_03284 at 3436.318 kb on - strand, within ECD_03284 at 3436.318 kb on - strand, within ECD_03284 at 3436.568 kb on + strand at 3436.569 kb on - strand at 3436.669 kb on + strand at 3436.778 kb on - strand at 3436.789 kb on + strand at 3436.790 kb on - strand at 3436.790 kb on - strand at 3436.797 kb on + strand at 3436.798 kb on - strand at 3436.798 kb on - strand at 3436.866 kb on + strand at 3436.866 kb on + strand at 3436.867 kb on - strand at 3436.874 kb on + strand at 3436.874 kb on + strand at 3436.875 kb on - strand at 3436.875 kb on - strand at 3436.877 kb on + strand at 3436.885 kb on - strand at 3436.913 kb on - strand at 3436.919 kb on + strand at 3436.926 kb on + strand at 3436.926 kb on + strand at 3438.059 kb on + strand at 3438.060 kb on - strand at 3438.060 kb on - strand at 3438.060 kb on - strand at 3438.062 kb on - strand at 3438.062 kb on - strand at 3438.062 kb on - strand at 3438.164 kb on + strand at 3438.177 kb on + strand at 3438.178 kb on - strand at 3438.202 kb on + strand at 3438.203 kb on - strand at 3438.220 kb on - strand at 3438.220 kb on - strand at 3438.248 kb on + strand at 3438.281 kb on + strand, within ECD_03286 at 3438.285 kb on + strand, within ECD_03286 at 3438.285 kb on + strand, within ECD_03286 at 3438.286 kb on - strand, within ECD_03286 at 3438.309 kb on + strand, within ECD_03286 at 3438.310 kb on - strand, within ECD_03286 at 3438.310 kb on - strand, within ECD_03286 at 3438.354 kb on + strand, within ECD_03286 at 3438.420 kb on - strand, within ECD_03286 at 3438.420 kb on - strand, within ECD_03286 at 3438.504 kb on + strand, within ECD_03286 at 3438.576 kb on + strand, within ECD_03286 at 3438.577 kb on - strand, within ECD_03286 at 3438.681 kb on - strand, within ECD_03286 at 3438.698 kb on + strand, within ECD_03286 at 3438.871 kb on + strand at 3438.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,435,969 + ECD_03284 0.69 -1.5 3,435,970 - ECD_03284 0.69 -0.3 3,435,996 - ECD_03284 0.70 -0.2 3,436,085 - ECD_03284 0.74 -0.6 3,436,085 - ECD_03284 0.74 +1.0 3,436,089 - ECD_03284 0.74 -1.3 3,436,089 - ECD_03284 0.74 -1.0 3,436,104 - ECD_03284 0.75 +0.8 3,436,260 - ECD_03284 0.82 -0.1 3,436,262 + ECD_03284 0.82 +0.4 3,436,262 + ECD_03284 0.82 +0.3 3,436,262 + ECD_03284 0.82 +0.8 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 +0.1 3,436,263 - ECD_03284 0.82 +0.1 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 -0.1 3,436,263 - ECD_03284 0.82 +0.5 3,436,305 - ECD_03284 0.84 +0.3 3,436,305 - ECD_03284 0.84 +0.1 3,436,318 - ECD_03284 0.85 -0.3 3,436,318 - ECD_03284 0.85 -0.2 3,436,568 + +0.3 3,436,569 - +0.5 3,436,669 + -0.4 3,436,778 - -0.3 3,436,789 + +0.4 3,436,790 - +1.2 3,436,790 - -0.3 3,436,797 + +0.2 3,436,798 - +0.5 3,436,798 - +0.1 3,436,866 + +0.5 3,436,866 + +0.1 3,436,867 - -0.1 3,436,874 + +0.6 3,436,874 + +0.8 3,436,875 - -0.3 3,436,875 - -0.0 3,436,877 + +0.5 3,436,885 - -0.5 3,436,913 - -0.2 3,436,919 + +0.9 3,436,926 + -0.0 3,436,926 + +0.6 3,438,059 + +0.5 3,438,060 - +0.2 3,438,060 - -0.5 3,438,060 - +0.2 3,438,062 - +0.1 3,438,062 - -0.3 3,438,062 - +0.3 3,438,164 + +0.1 3,438,177 + +0.4 3,438,178 - -0.7 3,438,202 + +0.0 3,438,203 - -0.0 3,438,220 - +0.3 3,438,220 - +0.1 3,438,248 + -0.2 3,438,281 + ECD_03286 0.10 -0.2 3,438,285 + ECD_03286 0.11 -0.5 3,438,285 + ECD_03286 0.11 -0.3 3,438,286 - ECD_03286 0.11 -0.8 3,438,309 + ECD_03286 0.15 -0.2 3,438,310 - ECD_03286 0.15 +0.3 3,438,310 - ECD_03286 0.15 -0.3 3,438,354 + ECD_03286 0.23 -0.5 3,438,420 - ECD_03286 0.34 -0.4 3,438,420 - ECD_03286 0.34 +0.3 3,438,504 + ECD_03286 0.48 +0.2 3,438,576 + ECD_03286 0.60 -0.2 3,438,577 - ECD_03286 0.60 -0.4 3,438,681 - ECD_03286 0.78 -0.2 3,438,698 + ECD_03286 0.80 +0.5 3,438,871 + -0.3 3,438,871 + -0.7
Or see this region's nucleotide sequence