Strain Fitness in Escherichia coli BL21 around ECD_03228
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
3,364,664 | - | -0.3 | |||
3,364,684 | + | -0.2 | |||
3,364,977 | - | -1.1 | |||
3,365,031 | + | +0.6 | |||
3,365,032 | - | -0.2 | |||
3,365,104 | + | +0.5 | |||
3,365,104 | + | +0.2 | |||
3,365,104 | + | +0.5 | |||
3,365,105 | - | +1.1 | |||
3,365,105 | - | +0.2 | |||
3,365,105 | - | +0.7 | |||
3,365,105 | - | +0.1 | |||
3,365,161 | - | -0.3 | |||
3,365,895 | + | -0.1 | |||
3,365,895 | + | +0.2 | |||
3,365,947 | + | -0.1 | |||
3,365,947 | + | -0.2 | |||
3,365,947 | + | -0.6 | |||
3,365,947 | + | -0.2 | |||
3,365,947 | + | -0.5 | |||
3,365,948 | - | +0.0 | |||
3,365,948 | - | -0.3 | |||
3,366,051 | - | -0.4 | |||
3,366,053 | + | +0.1 | |||
3,366,279 | + | -0.1 | |||
3,366,279 | + | +0.2 | |||
3,366,280 | - | +0.3 | |||
3,366,280 | - | +0.1 | |||
3,366,280 | - | -0.0 | |||
3,366,294 | - | +0.9 | |||
3,366,365 | + | +0.6 | |||
3,366,398 | + | +0.1 | |||
3,366,398 | + | -0.2 | |||
3,366,399 | - | -0.3 | |||
3,366,399 | - | -0.1 | |||
3,366,412 | - | +0.4 | |||
3,366,470 | + | +0.1 | |||
3,366,532 | - | +0.4 | |||
3,366,560 | - | ECD_03229 | 0.11 | -0.1 | |
3,366,623 | - | ECD_03229 | 0.16 | +0.1 | |
3,366,623 | - | ECD_03229 | 0.16 | -0.8 | |
3,366,721 | + | ECD_03229 | 0.24 | +0.0 | |
3,366,769 | - | ECD_03229 | 0.28 | -0.9 | |
3,366,791 | - | ECD_03229 | 0.29 | +0.2 | |
3,366,807 | + | ECD_03229 | 0.30 | -0.1 | |
3,366,808 | - | ECD_03229 | 0.30 | +0.2 |
Or see this region's nucleotide sequence