Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03120 and ECD_03121 are separated by 83 nucleotides ECD_03121 and ECD_03122 are separated by 2 nucleotides
ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693
_03120
ECD_03121: ECD_03121 - putative membrane protein, at 3,273,777 to 3,273,956
_03121
ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621
_03122
Position (kb)
3273
3274 Strain fitness (log2 ratio)
-1
0
1
2 at 3272.895 kb on - strand at 3272.895 kb on - strand at 3272.899 kb on - strand, within ECD_03120 at 3272.936 kb on - strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.061 kb on - strand, within ECD_03120 at 3273.115 kb on - strand, within ECD_03120 at 3273.143 kb on - strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.226 kb on + strand, within ECD_03120 at 3273.227 kb on - strand, within ECD_03120 at 3273.316 kb on + strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.367 kb on + strand, within ECD_03120 at 3273.371 kb on + strand, within ECD_03120 at 3273.593 kb on - strand, within ECD_03120 at 3273.734 kb on - strand at 3273.833 kb on + strand, within ECD_03121 at 3274.327 kb on - strand, within ECD_03122 at 3274.477 kb on - strand, within ECD_03122 at 3274.536 kb on - strand, within ECD_03122 at 3274.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,272,895 - -0.1 3,272,895 - +0.8 3,272,899 - ECD_03120 0.10 +0.2 3,272,936 - ECD_03120 0.14 -0.8 3,273,055 + ECD_03120 0.28 +2.1 3,273,055 + ECD_03120 0.28 -0.0 3,273,061 - ECD_03120 0.28 +0.0 3,273,115 - ECD_03120 0.35 +0.4 3,273,143 - ECD_03120 0.38 +0.1 3,273,187 + ECD_03120 0.43 -0.2 3,273,187 + ECD_03120 0.43 +0.2 3,273,188 - ECD_03120 0.43 +0.5 3,273,188 - ECD_03120 0.43 +0.3 3,273,188 - ECD_03120 0.43 +0.2 3,273,226 + ECD_03120 0.47 +0.6 3,273,227 - ECD_03120 0.47 +0.7 3,273,316 + ECD_03120 0.57 +0.4 3,273,317 - ECD_03120 0.57 -0.4 3,273,317 - ECD_03120 0.57 +1.0 3,273,367 + ECD_03120 0.63 -0.8 3,273,371 + ECD_03120 0.64 -0.1 3,273,593 - ECD_03120 0.89 +0.1 3,273,734 - -0.2 3,273,833 + ECD_03121 0.31 -0.7 3,274,327 - ECD_03122 0.56 +0.4 3,274,477 - ECD_03122 0.78 +0.2 3,274,536 - ECD_03122 0.87 -0.1 3,274,872 + +0.1
Or see this region's nucleotide sequence