Strain Fitness in Escherichia coli BL21 around ECD_03075

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03073 and ECD_03074 overlap by 4 nucleotidesECD_03074 and ECD_03075 are separated by 229 nucleotidesECD_03075 and ECD_03076 are separated by 95 nucleotides ECD_03073: ECD_03073 - biosynthetic peptidoglycan transglycosylase, at 3,217,581 to 3,218,309 _03073 ECD_03074: ECD_03074 - isoprenoid biosynthesis protein with amidotransferase-like domain, at 3,218,306 to 3,218,959 _03074 ECD_03075: ECD_03075 - aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB, at 3,219,189 to 3,221,525 _03075 ECD_03076: ECD_03076 - putative Fe-S oxidoreductase, Radical SAM superfamily protein, at 3,221,621 to 3,222,550 _03076 Position (kb) 3219 3220 3221 3222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3218.283 kb on - strandat 3218.303 kb on + strandat 3218.341 kb on + strandat 3218.383 kb on + strand, within ECD_03074at 3218.383 kb on + strand, within ECD_03074at 3218.383 kb on + strand, within ECD_03074at 3218.384 kb on - strand, within ECD_03074at 3218.384 kb on - strand, within ECD_03074at 3218.384 kb on - strand, within ECD_03074at 3218.384 kb on - strand, within ECD_03074at 3218.384 kb on - strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.385 kb on + strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.386 kb on - strand, within ECD_03074at 3218.407 kb on + strand, within ECD_03074at 3218.554 kb on + strand, within ECD_03074at 3218.555 kb on - strand, within ECD_03074at 3218.555 kb on - strand, within ECD_03074at 3218.560 kb on + strand, within ECD_03074at 3218.815 kb on + strand, within ECD_03074at 3218.875 kb on + strand, within ECD_03074at 3218.942 kb on + strandat 3219.070 kb on + strandat 3219.108 kb on + strandat 3219.109 kb on - strandat 3219.109 kb on - strandat 3219.119 kb on - strandat 3219.119 kb on - strandat 3219.119 kb on - strandat 3219.119 kb on - strandat 3219.122 kb on - strandat 3219.162 kb on + strandat 3219.439 kb on + strand, within ECD_03075at 3219.440 kb on - strand, within ECD_03075at 3219.509 kb on - strand, within ECD_03075at 3219.509 kb on - strand, within ECD_03075at 3219.549 kb on - strand, within ECD_03075at 3219.549 kb on - strand, within ECD_03075at 3219.549 kb on - strand, within ECD_03075at 3219.573 kb on - strand, within ECD_03075at 3219.645 kb on - strand, within ECD_03075at 3219.768 kb on - strand, within ECD_03075at 3219.782 kb on + strand, within ECD_03075at 3219.783 kb on - strand, within ECD_03075at 3220.065 kb on - strand, within ECD_03075at 3220.065 kb on - strand, within ECD_03075at 3220.065 kb on - strand, within ECD_03075at 3220.162 kb on + strand, within ECD_03075at 3220.165 kb on + strand, within ECD_03075at 3220.166 kb on - strand, within ECD_03075at 3220.166 kb on - strand, within ECD_03075at 3220.166 kb on - strand, within ECD_03075at 3220.166 kb on - strand, within ECD_03075at 3220.330 kb on - strand, within ECD_03075at 3220.470 kb on - strand, within ECD_03075at 3220.641 kb on - strand, within ECD_03075at 3220.777 kb on + strand, within ECD_03075at 3220.778 kb on - strand, within ECD_03075at 3220.781 kb on - strand, within ECD_03075at 3220.844 kb on - strand, within ECD_03075at 3220.860 kb on - strand, within ECD_03075at 3221.055 kb on + strand, within ECD_03075at 3221.193 kb on - strand, within ECD_03075at 3221.314 kb on + strandat 3221.315 kb on - strandat 3221.361 kb on - strandat 3221.413 kb on - strandat 3221.473 kb on - strandat 3221.494 kb on + strandat 3221.494 kb on + strandat 3221.495 kb on - strandat 3221.497 kb on + strandat 3221.497 kb on + strandat 3221.498 kb on - strandat 3221.498 kb on - strandat 3221.558 kb on - strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.622 kb on + strandat 3221.778 kb on + strand, within ECD_03076at 3221.778 kb on + strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.829 kb on + strand, within ECD_03076at 3221.829 kb on + strand, within ECD_03076at 3221.830 kb on - strand, within ECD_03076at 3221.899 kb on + strand, within ECD_03076at 3221.918 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.152 kb on - strand, within ECD_03076at 3222.224 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.290 kb on - strand, within ECD_03076at 3222.291 kb on + strand, within ECD_03076at 3222.291 kb on + strand, within ECD_03076at 3222.312 kb on + strand, within ECD_03076at 3222.313 kb on - strand, within ECD_03076at 3222.313 kb on - strand, within ECD_03076at 3222.332 kb on + strand, within ECD_03076at 3222.407 kb on - strand, within ECD_03076at 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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3,218,283 - +0.0
3,218,303 + +0.1
3,218,341 + +1.5
3,218,383 + ECD_03074 0.12 +0.2
3,218,383 + ECD_03074 0.12 -0.1
3,218,383 + ECD_03074 0.12 +0.4
3,218,384 - ECD_03074 0.12 -0.6
3,218,384 - ECD_03074 0.12 +0.2
3,218,384 - ECD_03074 0.12 +0.6
3,218,384 - ECD_03074 0.12 +0.7
3,218,384 - ECD_03074 0.12 -0.4
3,218,385 + ECD_03074 0.12 +0.4
3,218,385 + ECD_03074 0.12 +0.1
3,218,385 + ECD_03074 0.12 -0.1
3,218,385 + ECD_03074 0.12 -0.3
3,218,385 + ECD_03074 0.12 +0.1
3,218,385 + ECD_03074 0.12 +0.3
3,218,385 + ECD_03074 0.12 +0.7
3,218,385 + ECD_03074 0.12 +0.4
3,218,386 - ECD_03074 0.12 -0.3
3,218,386 - ECD_03074 0.12 +0.1
3,218,386 - ECD_03074 0.12 -0.2
3,218,386 - ECD_03074 0.12 +0.3
3,218,386 - ECD_03074 0.12 +0.0
3,218,386 - ECD_03074 0.12 -0.1
3,218,386 - ECD_03074 0.12 -0.5
3,218,386 - ECD_03074 0.12 +0.1
3,218,386 - ECD_03074 0.12 -0.2
3,218,386 - ECD_03074 0.12 +0.3
3,218,386 - ECD_03074 0.12 +0.1
3,218,407 + ECD_03074 0.15 +0.5
3,218,554 + ECD_03074 0.38 -0.0
3,218,555 - ECD_03074 0.38 -0.2
3,218,555 - ECD_03074 0.38 +0.7
3,218,560 + ECD_03074 0.39 -0.4
3,218,815 + ECD_03074 0.78 +2.1
3,218,875 + ECD_03074 0.87 +0.2
3,218,942 + -2.9
3,219,070 + +1.2
3,219,108 + -0.2
3,219,109 - +0.1
3,219,109 - +0.0
3,219,119 - +0.1
3,219,119 - -0.8
3,219,119 - +0.3
3,219,119 - +0.2
3,219,122 - -0.5
3,219,162 + -0.1
3,219,439 + ECD_03075 0.11 -0.1
3,219,440 - ECD_03075 0.11 -0.8
3,219,509 - ECD_03075 0.14 +0.3
3,219,509 - ECD_03075 0.14 -0.4
3,219,549 - ECD_03075 0.15 -1.3
3,219,549 - ECD_03075 0.15 -1.0
3,219,549 - ECD_03075 0.15 -2.3
3,219,573 - ECD_03075 0.16 -1.8
3,219,645 - ECD_03075 0.20 +0.5
3,219,768 - ECD_03075 0.25 +0.2
3,219,782 + ECD_03075 0.25 +2.5
3,219,783 - ECD_03075 0.25 +0.0
3,220,065 - ECD_03075 0.37 -1.8
3,220,065 - ECD_03075 0.37 +0.3
3,220,065 - ECD_03075 0.37 -1.3
3,220,162 + ECD_03075 0.42 -0.5
3,220,165 + ECD_03075 0.42 -0.5
3,220,166 - ECD_03075 0.42 -0.8
3,220,166 - ECD_03075 0.42 -0.8
3,220,166 - ECD_03075 0.42 -1.1
3,220,166 - ECD_03075 0.42 +1.2
3,220,330 - ECD_03075 0.49 +2.2
3,220,470 - ECD_03075 0.55 -1.1
3,220,641 - ECD_03075 0.62 +0.5
3,220,777 + ECD_03075 0.68 -0.5
3,220,778 - ECD_03075 0.68 -1.5
3,220,781 - ECD_03075 0.68 -1.2
3,220,844 - ECD_03075 0.71 -0.5
3,220,860 - ECD_03075 0.72 -1.4
3,221,055 + ECD_03075 0.80 +1.5
3,221,193 - ECD_03075 0.86 -1.8
3,221,314 + +0.5
3,221,315 - -0.8
3,221,361 - +3.5
3,221,413 - +0.0
3,221,473 - +0.0
3,221,494 + -0.7
3,221,494 + -0.3
3,221,495 - +0.3
3,221,497 + +0.6
3,221,497 + -0.7
3,221,498 - -0.7
3,221,498 - -2.2
3,221,558 - +0.0
3,221,577 + +0.3
3,221,577 + +0.3
3,221,577 + -0.8
3,221,577 + +0.6
3,221,578 - -0.1
3,221,578 - +0.1
3,221,578 - +0.4
3,221,578 - -0.2
3,221,622 + +0.1
3,221,778 + ECD_03076 0.17 +1.1
3,221,778 + ECD_03076 0.17 -0.7
3,221,779 - ECD_03076 0.17 +0.1
3,221,779 - ECD_03076 0.17 +0.3
3,221,779 - ECD_03076 0.17 -0.4
3,221,779 - ECD_03076 0.17 +0.4
3,221,829 + ECD_03076 0.22 +0.0
3,221,829 + ECD_03076 0.22 -1.0
3,221,830 - ECD_03076 0.22 -0.7
3,221,899 + ECD_03076 0.30 -0.3
3,221,918 + ECD_03076 0.32 +0.5
3,221,999 + ECD_03076 0.41 -0.0
3,221,999 + ECD_03076 0.41 -0.9
3,221,999 + ECD_03076 0.41 +0.4
3,222,000 - ECD_03076 0.41 +0.3
3,222,000 - ECD_03076 0.41 -0.2
3,222,000 - ECD_03076 0.41 +0.0
3,222,046 + ECD_03076 0.46 +1.3
3,222,046 + ECD_03076 0.46 -0.3
3,222,046 + ECD_03076 0.46 -0.2
3,222,151 + ECD_03076 0.57 -0.3
3,222,151 + ECD_03076 0.57 +0.8
3,222,151 + ECD_03076 0.57 -0.5
3,222,151 + ECD_03076 0.57 -0.3
3,222,152 - ECD_03076 0.57 +0.1
3,222,224 - ECD_03076 0.65 +0.3
3,222,250 - ECD_03076 0.68 -0.6
3,222,250 - ECD_03076 0.68 -0.1
3,222,250 - ECD_03076 0.68 -0.2
3,222,253 + ECD_03076 0.68 +0.2
3,222,253 + ECD_03076 0.68 -0.3
3,222,253 + ECD_03076 0.68 +0.3
3,222,253 + ECD_03076 0.68 -0.2
3,222,253 + ECD_03076 0.68 +0.6
3,222,254 - ECD_03076 0.68 -0.7
3,222,254 - ECD_03076 0.68 +0.7
3,222,254 - ECD_03076 0.68 -0.1
3,222,254 - ECD_03076 0.68 -1.5
3,222,254 - ECD_03076 0.68 -0.2
3,222,254 - ECD_03076 0.68 +0.6
3,222,290 - ECD_03076 0.72 +0.3
3,222,291 + ECD_03076 0.72 -0.1
3,222,291 + ECD_03076 0.72 -0.4
3,222,312 + ECD_03076 0.74 +0.4
3,222,313 - ECD_03076 0.74 -0.7
3,222,313 - ECD_03076 0.74 -0.4
3,222,332 + ECD_03076 0.76 -1.3
3,222,407 - ECD_03076 0.85 -0.6
3,222,482 - -0.2
3,222,482 - -0.4
3,222,482 - -0.3
3,222,482 - +0.0
3,222,482 - +1.3

Or see this region's nucleotide sequence