Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03062 and ECD_03063 are separated by 20 nucleotides ECD_03063 and ECD_03064 overlap by 4 nucleotides ECD_03064 and ECD_03065 overlap by 32 nucleotides ECD_03065 and ECD_03066 are separated by 6 nucleotides
ECD_03062: ECD_03062 - D-arabinose 5-phosphate isomerase, at 3,209,766 to 3,210,752
_03062
ECD_03063: ECD_03063 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 3,210,773 to 3,211,339
_03063
ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911
_03064
ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437
_03065
ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169
_03066
Position (kb)
3211
3212 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3210.392 kb on + strand, within ECD_03062 at 3210.392 kb on + strand, within ECD_03062 at 3210.393 kb on - strand, within ECD_03062 at 3210.422 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.610 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.730 kb on + strand at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3211.058 kb on + strand, within ECD_03063 at 3211.136 kb on + strand, within ECD_03063 at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.764 kb on + strand, within ECD_03064 at 3211.764 kb on + strand, within ECD_03064 at 3211.787 kb on + strand, within ECD_03064 at 3211.789 kb on + strand, within ECD_03064
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,210,392 + ECD_03062 0.63 +0.1 3,210,392 + ECD_03062 0.63 +1.3 3,210,393 - ECD_03062 0.64 -0.5 3,210,422 + ECD_03062 0.66 +0.2 3,210,503 + ECD_03062 0.75 -0.5 3,210,503 + ECD_03062 0.75 -0.1 3,210,503 + ECD_03062 0.75 -0.3 3,210,503 + ECD_03062 0.75 +0.0 3,210,577 + ECD_03062 0.82 -0.4 3,210,577 + ECD_03062 0.82 +0.0 3,210,610 + ECD_03062 0.86 +0.0 3,210,652 + ECD_03062 0.90 +0.1 3,210,652 + ECD_03062 0.90 -0.6 3,210,652 + ECD_03062 0.90 -0.4 3,210,715 + -0.0 3,210,715 + +0.3 3,210,715 + +0.1 3,210,715 + +0.1 3,210,715 + +0.7 3,210,715 + +0.1 3,210,715 + +0.0 3,210,715 + -0.8 3,210,719 + +0.4 3,210,719 + -0.4 3,210,719 + +0.5 3,210,719 + -0.0 3,210,719 + +0.3 3,210,719 + -0.4 3,210,719 + +0.5 3,210,719 + -1.8 3,210,719 + -0.3 3,210,719 + -0.4 3,210,719 + +0.1 3,210,719 + +0.8 3,210,719 + -1.6 3,210,719 + +0.7 3,210,730 + +0.6 3,210,899 + ECD_03063 0.22 +0.2 3,210,899 + ECD_03063 0.22 +0.3 3,210,899 + ECD_03063 0.22 -1.0 3,210,899 + ECD_03063 0.22 +0.3 3,211,058 + ECD_03063 0.50 -0.2 3,211,136 + ECD_03063 0.64 +0.2 3,211,287 + +0.4 3,211,287 + +2.0 3,211,287 + +0.3 3,211,287 + -0.1 3,211,287 + +1.2 3,211,764 + ECD_03064 0.74 -0.8 3,211,764 + ECD_03064 0.74 -2.3 3,211,787 + ECD_03064 0.78 -1.0 3,211,789 + ECD_03064 0.79 -1.3
Or see this region's nucleotide sequence