Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03036 and ECD_03037 are separated by 27 nucleotides ECD_03037 and ECD_t00057 are separated by 206 nucleotides ECD_t00057 and ECD_03038 are separated by 347 nucleotides
ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025
_03036
ECD_03037: ECD_03037 - ribosome maturation factor for 30S subunits, at 3,186,053 to 3,186,505
_03037
ECD_t00057: ECD_t00057 - tRNA-Met, at 3,186,712 to 3,186,788
_t00057
ECD_03038: ECD_03038 - argininosuccinate synthetase, at 3,187,136 to 3,188,479
_03038
Position (kb)
3186
3187 Strain fitness (log2 ratio)
-2
-1
0
1 at 3186.125 kb on - strand, within ECD_03037 at 3186.290 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.292 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.333 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.391 kb on - strand, within ECD_03037 at 3186.470 kb on - strand at 3186.470 kb on - strand at 3186.523 kb on - strand at 3186.547 kb on - strand at 3186.591 kb on - strand at 3186.661 kb on - strand at 3186.684 kb on - strand at 3186.809 kb on - strand at 3186.853 kb on - strand at 3186.883 kb on + strand at 3186.883 kb on + strand at 3186.883 kb on + strand at 3186.885 kb on + strand at 3186.886 kb on - strand at 3186.964 kb on - strand at 3187.118 kb on + strand at 3187.118 kb on + strand at 3187.174 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.256 kb on + strand at 3187.257 kb on - strand at 3187.257 kb on - strand at 3187.258 kb on + strand at 3187.258 kb on + strand at 3187.293 kb on - strand, within ECD_03038 at 3187.378 kb on + strand, within ECD_03038 at 3187.408 kb on + strand, within ECD_03038 at 3187.430 kb on + strand, within ECD_03038 at 3187.431 kb on - strand, within ECD_03038
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,186,125 - ECD_03037 0.16 -0.8 3,186,290 - ECD_03037 0.52 -2.4 3,186,292 - ECD_03037 0.53 -0.6 3,186,292 - ECD_03037 0.53 -0.5 3,186,292 - ECD_03037 0.53 -0.4 3,186,333 - ECD_03037 0.62 -0.5 3,186,333 - ECD_03037 0.62 -1.7 3,186,333 - ECD_03037 0.62 +0.5 3,186,391 - ECD_03037 0.75 -0.6 3,186,391 - ECD_03037 0.75 -0.6 3,186,391 - ECD_03037 0.75 -0.4 3,186,470 - -0.1 3,186,470 - -1.6 3,186,523 - -0.1 3,186,547 - -0.5 3,186,591 - +0.0 3,186,661 - -0.1 3,186,684 - +0.1 3,186,809 - -0.4 3,186,853 - -0.2 3,186,883 + +0.2 3,186,883 + -0.4 3,186,883 + +0.4 3,186,885 + +0.4 3,186,886 - +0.4 3,186,964 - +0.1 3,187,118 + -0.7 3,187,118 + -1.4 3,187,174 + -2.4 3,187,256 + -0.8 3,187,256 + -0.9 3,187,256 + -1.8 3,187,256 + -1.6 3,187,256 + -1.6 3,187,257 - -1.4 3,187,257 - -0.4 3,187,258 + -0.7 3,187,258 + -1.0 3,187,293 - ECD_03038 0.12 -1.2 3,187,378 + ECD_03038 0.18 -2.5 3,187,408 + ECD_03038 0.20 -1.2 3,187,430 + ECD_03038 0.22 -1.8 3,187,431 - ECD_03038 0.22 -1.5
Or see this region's nucleotide sequence