Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02934 and ECD_02935 are separated by 237 nucleotides ECD_02935 and ECD_02936 are separated by 110 nucleotides ECD_02936 and ECD_02937 are separated by 194 nucleotides
ECD_02934: ECD_02934 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein, at 3,075,612 to 3,076,625
_02934
ECD_02935: ECD_02935 - 30S ribosomal subunit protein S21, at 3,076,863 to 3,077,078
_02935
ECD_02936: ECD_02936 - DNA primase, at 3,077,189 to 3,078,934
_02936
ECD_02937: ECD_02937 - RNA polymerase, sigma 70 (sigma D) factor, at 3,079,129 to 3,080,970
_02937
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-1
0
1
2 at 3076.661 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.716 kb on - strand at 3076.717 kb on + strand at 3076.717 kb on + strand at 3076.718 kb on - strand at 3076.732 kb on + strand at 3077.076 kb on + strand at 3077.076 kb on + strand at 3078.937 kb on + strand at 3078.945 kb on + strand at 3078.945 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.025 kb on + strand at 3079.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,076,661 - -0.3 3,076,716 - -0.4 3,076,716 - +0.5 3,076,716 - -0.0 3,076,716 - +0.2 3,076,716 - +0.4 3,076,716 - +1.3 3,076,716 - +0.2 3,076,716 - +0.7 3,076,716 - -0.5 3,076,717 + -0.7 3,076,717 + -0.4 3,076,718 - +0.7 3,076,732 + +0.4 3,077,076 + +1.0 3,077,076 + -0.7 3,078,937 + -0.5 3,078,945 + +0.2 3,078,945 + +0.1 3,079,003 + -1.3 3,079,003 + +0.5 3,079,003 + +0.1 3,079,003 + -0.7 3,079,003 + -0.5 3,079,005 + -0.2 3,079,005 + -0.7 3,079,005 + -0.1 3,079,005 + -0.3 3,079,007 + -0.4 3,079,007 + -1.5 3,079,007 + +1.0 3,079,007 + +0.2 3,079,007 + -0.1 3,079,007 + -0.3 3,079,007 + +0.1 3,079,007 + -1.1 3,079,007 + -0.7 3,079,007 + -1.6 3,079,007 + -0.4 3,079,007 + -1.4 3,079,007 + +0.7 3,079,007 + +0.2 3,079,007 + +0.5 3,079,011 + +2.2 3,079,011 + -0.8 3,079,011 + -0.2 3,079,011 + +0.2 3,079,021 + -0.5 3,079,021 + -0.2 3,079,021 + -0.7 3,079,021 + -1.3 3,079,025 + -0.3 3,079,025 + -0.6
Or see this region's nucleotide sequence