Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02898 and ECD_02899 are separated by 45 nucleotides ECD_02899 and ECD_02900 are separated by 318 nucleotides ECD_02900 and ECD_02901 are separated by 30 nucleotides
ECD_02898: ECD_02898 - quorum sensing sensory histidine kinase in two-component regulatory system with QseB, at 3,037,921 to 3,039,270
_02898
ECD_02899: ECD_02899 - inner membrane protein, at 3,039,316 to 3,039,648
_02899
ECD_02900: ECD_02900 - NADPH quinone reductase, at 3,039,967 to 3,040,548
_02900
ECD_02901: ECD_02901 - quinol monooxygenase, at 3,040,579 to 3,040,893
_02901
Position (kb)
3039
3040 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3038.371 kb on + strand, within ECD_02898 at 3038.371 kb on + strand, within ECD_02898 at 3038.444 kb on + strand, within ECD_02898 at 3038.459 kb on + strand, within ECD_02898 at 3038.459 kb on + strand, within ECD_02898 at 3038.462 kb on + strand, within ECD_02898 at 3038.507 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.512 kb on - strand, within ECD_02898 at 3038.641 kb on - strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.889 kb on + strand, within ECD_02898 at 3038.893 kb on + strand, within ECD_02898 at 3038.978 kb on + strand, within ECD_02898 at 3039.133 kb on + strand, within ECD_02898 at 3039.133 kb on + strand, within ECD_02898 at 3039.282 kb on - strand at 3039.392 kb on - strand, within ECD_02899 at 3039.929 kb on + strand at 3039.929 kb on + strand at 3039.930 kb on - strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.932 kb on + strand at 3039.933 kb on - strand at 3039.934 kb on + strand at 3040.220 kb on + strand, within ECD_02900 at 3040.220 kb on + strand, within ECD_02900 at 3040.221 kb on - strand, within ECD_02900 at 3040.246 kb on + strand, within ECD_02900 at 3040.323 kb on + strand, within ECD_02900 at 3040.323 kb on + strand, within ECD_02900 at 3040.409 kb on - strand, within ECD_02900 at 3040.409 kb on - strand, within ECD_02900 at 3040.464 kb on + strand, within ECD_02900 at 3040.465 kb on - strand, within ECD_02900 at 3040.506 kb on + strand at 3040.506 kb on + strand at 3040.507 kb on - strand at 3040.546 kb on + strand at 3040.550 kb on + strand at 3040.550 kb on + strand at 3040.550 kb on + strand at 3040.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,038,371 + ECD_02898 0.33 -0.2 3,038,371 + ECD_02898 0.33 -0.0 3,038,444 + ECD_02898 0.39 -0.7 3,038,459 + ECD_02898 0.40 -0.2 3,038,459 + ECD_02898 0.40 -0.4 3,038,462 + ECD_02898 0.40 +0.8 3,038,507 + ECD_02898 0.43 +0.7 3,038,511 + ECD_02898 0.44 +0.1 3,038,511 + ECD_02898 0.44 +0.2 3,038,511 + ECD_02898 0.44 -0.8 3,038,511 + ECD_02898 0.44 +0.3 3,038,511 + ECD_02898 0.44 -0.1 3,038,511 + ECD_02898 0.44 +0.5 3,038,511 + ECD_02898 0.44 -0.1 3,038,511 + ECD_02898 0.44 -0.6 3,038,511 + ECD_02898 0.44 -0.4 3,038,512 - ECD_02898 0.44 -1.5 3,038,641 - ECD_02898 0.53 +0.8 3,038,756 + ECD_02898 0.62 +0.4 3,038,756 + ECD_02898 0.62 -0.2 3,038,756 + ECD_02898 0.62 -0.5 3,038,889 + ECD_02898 0.72 -0.0 3,038,893 + ECD_02898 0.72 +0.1 3,038,978 + ECD_02898 0.78 -0.5 3,039,133 + ECD_02898 0.90 +0.6 3,039,133 + ECD_02898 0.90 +0.5 3,039,282 - -0.1 3,039,392 - ECD_02899 0.23 -0.8 3,039,929 + +0.1 3,039,929 + +0.4 3,039,930 - +2.8 3,039,932 + +0.6 3,039,932 + -0.2 3,039,932 + +0.2 3,039,932 + -0.3 3,039,932 + +0.6 3,039,933 - -1.0 3,039,934 + +0.1 3,040,220 + ECD_02900 0.43 +0.6 3,040,220 + ECD_02900 0.43 -0.1 3,040,221 - ECD_02900 0.44 +0.4 3,040,246 + ECD_02900 0.48 +0.0 3,040,323 + ECD_02900 0.61 -0.4 3,040,323 + ECD_02900 0.61 -0.2 3,040,409 - ECD_02900 0.76 +0.3 3,040,409 - ECD_02900 0.76 -0.1 3,040,464 + ECD_02900 0.85 +0.1 3,040,465 - ECD_02900 0.86 +0.3 3,040,506 + +0.4 3,040,506 + +0.0 3,040,507 - +0.3 3,040,546 + -0.1 3,040,550 + +0.7 3,040,550 + +1.2 3,040,550 + -1.6 3,040,564 + +0.3
Or see this region's nucleotide sequence