Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02849 and ECD_02850 are separated by 6 nucleotides ECD_02850 and ECD_02851 are separated by 367 nucleotides
ECD_02849: ECD_02849 - glycolate-inducible glc operon transcriptional repressor; autorepressor, at 2,988,511 to 2,989,275
_02849
ECD_02850: ECD_02850 - putative DNA-binding transcriptional regulator, at 2,989,282 to 2,990,424
_02850
ECD_02851: ECD_02851 - putative saframycin Mx1 synthetase B, at 2,990,792 to 2,992,522
_02851
Position (kb)
2989
2990
2991 Strain fitness (log2 ratio)
-1
0
1 at 2988.325 kb on + strand at 2988.326 kb on - strand at 2988.326 kb on - strand at 2988.352 kb on - strand at 2988.359 kb on + strand at 2988.359 kb on + strand at 2988.468 kb on + strand at 2988.468 kb on + strand at 2988.489 kb on + strand at 2988.489 kb on + strand at 2988.490 kb on - strand at 2988.490 kb on - strand at 2988.493 kb on + strand at 2988.493 kb on + strand at 2988.532 kb on - strand at 2988.566 kb on + strand at 2988.570 kb on + strand at 2988.581 kb on + strand at 2988.793 kb on + strand, within ECD_02849 at 2988.794 kb on - strand, within ECD_02849 at 2988.819 kb on - strand, within ECD_02849 at 2988.892 kb on + strand, within ECD_02849 at 2989.014 kb on + strand, within ECD_02849 at 2989.014 kb on + strand, within ECD_02849 at 2989.015 kb on - strand, within ECD_02849 at 2989.044 kb on + strand, within ECD_02849 at 2989.064 kb on + strand, within ECD_02849 at 2989.068 kb on + strand, within ECD_02849 at 2989.069 kb on - strand, within ECD_02849 at 2989.126 kb on + strand, within ECD_02849 at 2989.126 kb on + strand, within ECD_02849 at 2989.127 kb on - strand, within ECD_02849 at 2989.273 kb on + strand at 2989.274 kb on - strand at 2989.283 kb on + strand at 2989.284 kb on - strand at 2989.299 kb on - strand at 2989.316 kb on + strand at 2989.317 kb on - strand at 2989.347 kb on + strand at 2989.348 kb on - strand at 2989.360 kb on - strand at 2989.363 kb on - strand at 2989.363 kb on - strand at 2989.655 kb on + strand, within ECD_02850 at 2989.655 kb on + strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.656 kb on - strand, within ECD_02850 at 2989.663 kb on - strand, within ECD_02850 at 2989.679 kb on + strand, within ECD_02850 at 2989.679 kb on + strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.684 kb on - strand, within ECD_02850 at 2989.720 kb on - strand, within ECD_02850 at 2990.055 kb on + strand, within ECD_02850 at 2990.056 kb on - strand, within ECD_02850 at 2990.056 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.185 kb on - strand, within ECD_02850 at 2990.188 kb on + strand, within ECD_02850 at 2990.188 kb on + strand, within ECD_02850 at 2990.189 kb on - strand, within ECD_02850 at 2990.203 kb on - strand, within ECD_02850 at 2990.212 kb on + strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.213 kb on - strand, within ECD_02850 at 2990.306 kb on - strand, within ECD_02850 at 2990.306 kb on - strand, within ECD_02850 at 2990.306 kb on - strand, within ECD_02850 at 2990.449 kb on - strand at 2990.806 kb on + strand at 2990.833 kb on + strand at 2990.945 kb on + strand at 2991.043 kb on + strand, within ECD_02851 at 2991.055 kb on - strand, within ECD_02851 at 2991.055 kb on - strand, within ECD_02851 at 2991.088 kb on - strand, within ECD_02851 at 2991.405 kb on + strand, within ECD_02851 at 2991.405 kb on + strand, within ECD_02851 at 2991.412 kb on + strand, within ECD_02851 at 2991.412 kb on + strand, within ECD_02851 at 2991.412 kb on + strand, within ECD_02851 at 2991.412 kb on + strand, within ECD_02851 at 2991.413 kb on - strand, within ECD_02851 at 2991.413 kb on - strand, within ECD_02851 at 2991.414 kb on + strand, within ECD_02851
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,988,325 + -0.1 2,988,326 - +0.3 2,988,326 - -1.1 2,988,352 - -0.7 2,988,359 + -0.2 2,988,359 + -0.7 2,988,468 + +0.3 2,988,468 + +0.8 2,988,489 + -0.4 2,988,489 + +0.2 2,988,490 - +0.6 2,988,490 - +0.6 2,988,493 + +0.2 2,988,493 + +0.7 2,988,532 - -0.1 2,988,566 + -0.1 2,988,570 + -0.7 2,988,581 + -0.3 2,988,793 + ECD_02849 0.37 -0.2 2,988,794 - ECD_02849 0.37 -0.2 2,988,819 - ECD_02849 0.40 +0.5 2,988,892 + ECD_02849 0.50 -0.2 2,989,014 + ECD_02849 0.66 +0.8 2,989,014 + ECD_02849 0.66 +0.3 2,989,015 - ECD_02849 0.66 +1.0 2,989,044 + ECD_02849 0.70 +0.6 2,989,064 + ECD_02849 0.72 +1.0 2,989,068 + ECD_02849 0.73 -0.6 2,989,069 - ECD_02849 0.73 -1.2 2,989,126 + ECD_02849 0.80 +0.0 2,989,126 + ECD_02849 0.80 -0.8 2,989,127 - ECD_02849 0.81 -0.3 2,989,273 + +1.5 2,989,274 - -0.5 2,989,283 + -0.5 2,989,284 - -0.1 2,989,299 - +0.2 2,989,316 + -1.3 2,989,317 - +0.3 2,989,347 + -0.7 2,989,348 - +1.4 2,989,360 - -0.1 2,989,363 - +0.3 2,989,363 - -0.4 2,989,655 + ECD_02850 0.33 -0.6 2,989,655 + ECD_02850 0.33 +0.3 2,989,656 - ECD_02850 0.33 -0.5 2,989,656 - ECD_02850 0.33 +0.3 2,989,656 - ECD_02850 0.33 +0.2 2,989,656 - ECD_02850 0.33 +0.3 2,989,656 - ECD_02850 0.33 +0.5 2,989,656 - ECD_02850 0.33 +0.1 2,989,663 - ECD_02850 0.33 -0.3 2,989,679 + ECD_02850 0.35 +1.5 2,989,679 + ECD_02850 0.35 -0.1 2,989,684 - ECD_02850 0.35 +0.5 2,989,684 - ECD_02850 0.35 +0.7 2,989,684 - ECD_02850 0.35 +0.2 2,989,720 - ECD_02850 0.38 +0.4 2,990,055 + ECD_02850 0.68 +1.2 2,990,056 - ECD_02850 0.68 -0.6 2,990,056 - ECD_02850 0.68 -0.2 2,990,185 - ECD_02850 0.79 +0.9 2,990,185 - ECD_02850 0.79 +0.8 2,990,185 - ECD_02850 0.79 +1.1 2,990,188 + ECD_02850 0.79 +0.7 2,990,188 + ECD_02850 0.79 +0.2 2,990,189 - ECD_02850 0.79 -0.1 2,990,203 - ECD_02850 0.81 -0.3 2,990,212 + ECD_02850 0.81 +0.5 2,990,213 - ECD_02850 0.81 -0.2 2,990,213 - ECD_02850 0.81 +0.9 2,990,213 - ECD_02850 0.81 +0.3 2,990,213 - ECD_02850 0.81 +0.8 2,990,306 - ECD_02850 0.90 +0.5 2,990,306 - ECD_02850 0.90 +0.3 2,990,306 - ECD_02850 0.90 +0.2 2,990,449 - +0.1 2,990,806 + -0.2 2,990,833 + +0.3 2,990,945 + +0.2 2,991,043 + ECD_02851 0.15 +0.2 2,991,055 - ECD_02851 0.15 -0.5 2,991,055 - ECD_02851 0.15 +0.5 2,991,088 - ECD_02851 0.17 +0.7 2,991,405 + ECD_02851 0.35 -0.7 2,991,405 + ECD_02851 0.35 +0.1 2,991,412 + ECD_02851 0.36 -0.7 2,991,412 + ECD_02851 0.36 -0.4 2,991,412 + ECD_02851 0.36 -0.8 2,991,412 + ECD_02851 0.36 -0.0 2,991,413 - ECD_02851 0.36 +0.1 2,991,413 - ECD_02851 0.36 +0.6 2,991,414 + ECD_02851 0.36 +0.1
Or see this region's nucleotide sequence