Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02834 and ECD_02835 are separated by 3 nucleotides ECD_02835 and ECD_02836 are separated by 16 nucleotides ECD_02836 and ECD_02837 overlap by 1 nucleotides
ECD_02834: ECD_02834 - putative type II secretion protein GspH, at 2,966,526 to 2,967,089
_02834
ECD_02835: ECD_02835 - putative type II secretion protein GspG, at 2,967,093 to 2,967,548
_02835
ECD_02836: ECD_02836 - putative type II secretion protein GspF, at 2,967,565 to 2,968,788
_02836
ECD_02837: ECD_02837 - putative type II secretion protein GspE, at 2,968,788 to 2,970,281
_02837
Position (kb)
2967
2968
2969 Strain fitness (log2 ratio)
-1
0
1
2 at 2966.614 kb on + strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.810 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2967.119 kb on + strand at 2967.174 kb on - strand, within ECD_02835 at 2967.176 kb on - strand, within ECD_02835 at 2967.211 kb on + strand, within ECD_02835 at 2967.217 kb on + strand, within ECD_02835 at 2967.218 kb on - strand, within ECD_02835 at 2967.251 kb on + strand, within ECD_02835 at 2967.252 kb on - strand, within ECD_02835 at 2967.256 kb on + strand, within ECD_02835 at 2967.272 kb on - strand, within ECD_02835 at 2967.272 kb on - strand, within ECD_02835 at 2967.290 kb on + strand, within ECD_02835 at 2967.290 kb on + strand, within ECD_02835 at 2967.361 kb on + strand, within ECD_02835 at 2967.361 kb on + strand, within ECD_02835 at 2967.477 kb on - strand, within ECD_02835 at 2967.567 kb on - strand at 2967.580 kb on - strand at 2967.580 kb on - strand at 2967.621 kb on + strand at 2967.776 kb on + strand, within ECD_02836 at 2967.776 kb on + strand, within ECD_02836 at 2967.776 kb on + strand, within ECD_02836 at 2967.777 kb on - strand, within ECD_02836 at 2967.879 kb on - strand, within ECD_02836 at 2967.952 kb on + strand, within ECD_02836 at 2967.953 kb on - strand, within ECD_02836 at 2968.259 kb on - strand, within ECD_02836 at 2968.259 kb on - strand, within ECD_02836 at 2968.484 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.553 kb on - strand, within ECD_02836 at 2968.686 kb on + strand at 2968.687 kb on - strand at 2968.756 kb on - strand at 2968.756 kb on - strand at 2968.891 kb on + strand at 2968.892 kb on - strand at 2968.892 kb on - strand at 2968.977 kb on - strand, within ECD_02837 at 2969.000 kb on + strand, within ECD_02837 at 2969.001 kb on - strand, within ECD_02837 at 2969.001 kb on - strand, within ECD_02837 at 2969.223 kb on - strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.313 kb on + strand, within ECD_02837 at 2969.314 kb on - strand, within ECD_02837 at 2969.314 kb on - strand, within ECD_02837 at 2969.411 kb on - strand, within ECD_02837
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,966,614 + ECD_02834 0.16 +1.9 2,966,750 - ECD_02834 0.40 -0.5 2,966,750 - ECD_02834 0.40 -0.3 2,966,810 + ECD_02834 0.50 -1.0 2,966,898 + ECD_02834 0.66 -1.4 2,966,898 + ECD_02834 0.66 -0.2 2,967,119 + +0.2 2,967,174 - ECD_02835 0.18 -0.4 2,967,176 - ECD_02835 0.18 +0.1 2,967,211 + ECD_02835 0.26 -0.6 2,967,217 + ECD_02835 0.27 -0.2 2,967,218 - ECD_02835 0.27 -0.2 2,967,251 + ECD_02835 0.35 +0.6 2,967,252 - ECD_02835 0.35 -0.5 2,967,256 + ECD_02835 0.36 +1.0 2,967,272 - ECD_02835 0.39 -0.5 2,967,272 - ECD_02835 0.39 +0.5 2,967,290 + ECD_02835 0.43 -1.3 2,967,290 + ECD_02835 0.43 -1.1 2,967,361 + ECD_02835 0.59 +0.3 2,967,361 + ECD_02835 0.59 +0.4 2,967,477 - ECD_02835 0.84 +0.6 2,967,567 - +0.2 2,967,580 - +0.9 2,967,580 - -0.3 2,967,621 + +0.0 2,967,776 + ECD_02836 0.17 +0.5 2,967,776 + ECD_02836 0.17 +0.1 2,967,776 + ECD_02836 0.17 -0.0 2,967,777 - ECD_02836 0.17 -0.1 2,967,879 - ECD_02836 0.26 +0.6 2,967,952 + ECD_02836 0.32 +0.2 2,967,953 - ECD_02836 0.32 +0.4 2,968,259 - ECD_02836 0.57 +0.4 2,968,259 - ECD_02836 0.57 +0.4 2,968,484 - ECD_02836 0.75 +0.2 2,968,553 - ECD_02836 0.81 +0.6 2,968,553 - ECD_02836 0.81 -0.1 2,968,553 - ECD_02836 0.81 +0.3 2,968,686 + +1.0 2,968,687 - +0.2 2,968,756 - +0.2 2,968,756 - +0.3 2,968,891 + -0.2 2,968,892 - -0.3 2,968,892 - -0.0 2,968,977 - ECD_02837 0.13 -0.2 2,969,000 + ECD_02837 0.14 +0.3 2,969,001 - ECD_02837 0.14 +0.8 2,969,001 - ECD_02837 0.14 +0.0 2,969,223 - ECD_02837 0.29 +0.5 2,969,313 + ECD_02837 0.35 +0.0 2,969,313 + ECD_02837 0.35 -0.5 2,969,313 + ECD_02837 0.35 -0.3 2,969,313 + ECD_02837 0.35 +0.6 2,969,314 - ECD_02837 0.35 +0.4 2,969,314 - ECD_02837 0.35 -0.4 2,969,411 - ECD_02837 0.42 -0.2
Or see this region's nucleotide sequence