Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02824 and ECD_02825 are separated by 28 nucleotides ECD_02825 and ECD_02826 are separated by 17 nucleotides ECD_02826 and ECD_02827 are separated by 208 nucleotides ECD_02827 and ECD_02828 are separated by 14 nucleotides
ECD_02823: ECD_02823 - IS1 protein InsB, at 2,957,307 to 2,957,810
_02823
ECD_02824: ECD_02824 - IS1 protein InsA, at 2,957,729 to 2,958,004
_02824
ECD_02825: ECD_02825 - Pyrophosphorylase, at 2,958,033 to 2,958,755
_02825
ECD_02826: ECD_02826 - hypothetical protein, at 2,958,773 to 2,960,149
_02826
ECD_02827: ECD_02827 - Polysialic acid transport ATP-binding KpsT, at 2,960,358 to 2,961,017
_02827
ECD_02828: ECD_02828 - Polysialic acid transport protein kpsM, at 2,961,032 to 2,961,808
_02828
Position (kb)
2958
2959
2960
2961 Strain fitness (log2 ratio)
-1
0
1 at 2958.073 kb on - strand at 2958.098 kb on + strand at 2958.099 kb on - strand at 2958.247 kb on - strand, within ECD_02825 at 2958.251 kb on + strand, within ECD_02825 at 2959.256 kb on - strand, within ECD_02826 at 2960.980 kb on + strand at 2961.093 kb on - strand at 2961.115 kb on - strand, within ECD_02828 at 2961.142 kb on - strand, within ECD_02828
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,958,073 - +0.4 2,958,098 + -0.7 2,958,099 - +0.7 2,958,247 - ECD_02825 0.30 +0.9 2,958,251 + ECD_02825 0.30 -1.4 2,959,256 - ECD_02826 0.35 -0.7 2,960,980 + +0.9 2,961,093 - +0.5 2,961,115 - ECD_02828 0.11 +0.7 2,961,142 - ECD_02828 0.14 +0.1
Or see this region's nucleotide sequence