Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02737 and ECD_02738 are separated by 446 nucleotides ECD_02738 and ECD_02739 are separated by 22 nucleotides
ECD_02737: ECD_02737 - aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex, at 2,880,432 to 2,881,526
_02737
ECD_02738: ECD_02738 - 2-octaprenylphenol hydroxylase, FAD-dependent, at 2,881,973 to 2,883,175
_02738
ECD_02739: ECD_02739 - 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding, at 2,883,198 to 2,884,376
_02739
Position (kb)
2881
2882
2883
2884 Strain fitness (log2 ratio)
-1
0
1 at 2881.046 kb on + strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.188 kb on - strand, within ECD_02737 at 2881.223 kb on - strand, within ECD_02737 at 2881.239 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.408 kb on - strand, within ECD_02737 at 2881.438 kb on + strand at 2881.504 kb on + strand at 2881.504 kb on + strand at 2881.505 kb on - strand at 2881.505 kb on - strand at 2881.543 kb on - strand at 2881.543 kb on - strand at 2881.669 kb on - strand at 2881.674 kb on - strand at 2882.128 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.185 kb on - strand, within ECD_02738 at 2882.257 kb on + strand, within ECD_02738 at 2882.629 kb on - strand, within ECD_02738 at 2883.111 kb on - strand at 2883.159 kb on - strand at 2883.159 kb on - strand at 2883.180 kb on + strand at 2883.181 kb on - strand at 2883.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,881,046 + ECD_02737 0.56 -0.3 2,881,047 - ECD_02737 0.56 -0.0 2,881,047 - ECD_02737 0.56 +0.4 2,881,047 - ECD_02737 0.56 -0.5 2,881,188 - ECD_02737 0.69 +0.7 2,881,223 - ECD_02737 0.72 -1.6 2,881,239 + ECD_02737 0.74 -0.0 2,881,373 + ECD_02737 0.86 +0.2 2,881,373 + ECD_02737 0.86 -0.2 2,881,373 + ECD_02737 0.86 +0.6 2,881,373 + ECD_02737 0.86 +0.5 2,881,374 - ECD_02737 0.86 -0.3 2,881,374 - ECD_02737 0.86 -0.4 2,881,374 - ECD_02737 0.86 -0.1 2,881,403 + ECD_02737 0.89 +0.7 2,881,403 + ECD_02737 0.89 -0.4 2,881,404 - ECD_02737 0.89 +0.4 2,881,404 - ECD_02737 0.89 -0.6 2,881,408 - ECD_02737 0.89 +0.0 2,881,438 + +0.1 2,881,504 + +0.5 2,881,504 + -0.3 2,881,505 - -0.6 2,881,505 - -1.4 2,881,543 - -0.8 2,881,543 - +1.7 2,881,669 - -0.2 2,881,674 - +0.5 2,882,128 + ECD_02738 0.13 -0.2 2,882,184 + ECD_02738 0.18 -0.6 2,882,184 + ECD_02738 0.18 -1.6 2,882,185 - ECD_02738 0.18 -1.6 2,882,257 + ECD_02738 0.24 +0.1 2,882,629 - ECD_02738 0.55 -0.3 2,883,111 - +0.2 2,883,159 - +0.4 2,883,159 - +0.2 2,883,180 + +0.2 2,883,181 - +0.2 2,883,256 - -0.1
Or see this region's nucleotide sequence