Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02720 and ECD_04357 are separated by 1 nucleotides ECD_04357 and ECD_02721 are separated by 122 nucleotides ECD_02721 and ECD_02722 are separated by 42 nucleotides
ECD_02720: ECD_02720 - uric acid permease, at 2,862,228 to 2,863,676
_02720
ECD_04357: ECD_04357 - small predicted membrane protein, at 2,863,678 to 2,863,803
_04357
ECD_02721: ECD_02721 - isopentenyl diphosphate isomerase, at 2,863,926 to 2,864,474
_02721
ECD_02722: ECD_02722 - lysine tRNA synthetase, constitutive, at 2,864,517 to 2,866,034
_02722
Position (kb)
2863
2864
2865 Strain fitness (log2 ratio)
-1
0
1 at 2862.926 kb on - strand, within ECD_02720 at 2862.971 kb on + strand, within ECD_02720 at 2863.079 kb on + strand, within ECD_02720 at 2863.138 kb on + strand, within ECD_02720 at 2863.138 kb on + strand, within ECD_02720 at 2863.246 kb on + strand, within ECD_02720 at 2863.246 kb on + strand, within ECD_02720 at 2863.247 kb on - strand, within ECD_02720 at 2863.249 kb on + strand, within ECD_02720 at 2863.327 kb on + strand, within ECD_02720 at 2863.346 kb on - strand, within ECD_02720 at 2863.380 kb on - strand, within ECD_02720 at 2863.384 kb on - strand, within ECD_02720 at 2863.398 kb on + strand, within ECD_02720 at 2863.407 kb on + strand, within ECD_02720 at 2863.407 kb on + strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.408 kb on - strand, within ECD_02720 at 2863.409 kb on + strand, within ECD_02720 at 2863.409 kb on + strand, within ECD_02720 at 2863.410 kb on - strand, within ECD_02720 at 2863.469 kb on + strand, within ECD_02720 at 2863.469 kb on + strand, within ECD_02720 at 2863.484 kb on - strand, within ECD_02720 at 2863.498 kb on + strand, within ECD_02720 at 2863.498 kb on + strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.499 kb on - strand, within ECD_02720 at 2863.503 kb on - strand, within ECD_02720 at 2863.503 kb on - strand, within ECD_02720 at 2863.511 kb on + strand, within ECD_02720 at 2863.511 kb on + strand, within ECD_02720 at 2863.624 kb on + strand at 2863.628 kb on + strand at 2863.628 kb on + strand at 2863.628 kb on + strand at 2863.629 kb on - strand at 2863.629 kb on - strand at 2863.678 kb on - strand at 2863.688 kb on + strand at 2863.700 kb on + strand, within ECD_04357 at 2863.701 kb on - strand, within ECD_04357 at 2863.722 kb on + strand, within ECD_04357 at 2863.783 kb on + strand, within ECD_04357 at 2863.783 kb on + strand, within ECD_04357 at 2863.785 kb on + strand, within ECD_04357 at 2863.785 kb on + strand, within ECD_04357 at 2863.812 kb on + strand at 2863.885 kb on + strand at 2863.889 kb on + strand at 2863.889 kb on + strand at 2863.889 kb on + strand at 2863.911 kb on + strand at 2863.911 kb on + strand at 2863.925 kb on + strand at 2863.989 kb on + strand, within ECD_02721 at 2864.017 kb on + strand, within ECD_02721 at 2864.017 kb on + strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.018 kb on - strand, within ECD_02721 at 2864.045 kb on + strand, within ECD_02721 at 2864.062 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.065 kb on + strand, within ECD_02721 at 2864.066 kb on - strand, within ECD_02721 at 2864.114 kb on + strand, within ECD_02721 at 2864.114 kb on + strand, within ECD_02721 at 2864.115 kb on - strand, within ECD_02721 at 2864.216 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.220 kb on + strand, within ECD_02721 at 2864.340 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.365 kb on + strand, within ECD_02721 at 2864.366 kb on - strand, within ECD_02721 at 2864.368 kb on + strand, within ECD_02721 at 2864.368 kb on + strand, within ECD_02721 at 2864.506 kb on + strand at 2864.511 kb on + strand at 2864.511 kb on + strand at 2864.511 kb on + strand at 2864.518 kb on + strand at 2864.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,862,926 - ECD_02720 0.48 -0.1 2,862,971 + ECD_02720 0.51 -0.9 2,863,079 + ECD_02720 0.59 +0.2 2,863,138 + ECD_02720 0.63 +0.4 2,863,138 + ECD_02720 0.63 -0.1 2,863,246 + ECD_02720 0.70 +0.8 2,863,246 + ECD_02720 0.70 -0.5 2,863,247 - ECD_02720 0.70 +0.9 2,863,249 + ECD_02720 0.70 -0.1 2,863,327 + ECD_02720 0.76 +0.8 2,863,346 - ECD_02720 0.77 +0.6 2,863,380 - ECD_02720 0.80 +0.1 2,863,384 - ECD_02720 0.80 +0.0 2,863,398 + ECD_02720 0.81 -0.2 2,863,407 + ECD_02720 0.81 -1.2 2,863,407 + ECD_02720 0.81 +0.3 2,863,408 - ECD_02720 0.81 -0.8 2,863,408 - ECD_02720 0.81 -0.3 2,863,408 - ECD_02720 0.81 -0.2 2,863,409 + ECD_02720 0.82 +0.3 2,863,409 + ECD_02720 0.82 -0.0 2,863,410 - ECD_02720 0.82 -0.0 2,863,469 + ECD_02720 0.86 -0.2 2,863,469 + ECD_02720 0.86 +0.3 2,863,484 - ECD_02720 0.87 +0.8 2,863,498 + ECD_02720 0.88 +0.1 2,863,498 + ECD_02720 0.88 -0.2 2,863,499 - ECD_02720 0.88 -0.5 2,863,499 - ECD_02720 0.88 -0.2 2,863,499 - ECD_02720 0.88 +0.1 2,863,503 - ECD_02720 0.88 -0.5 2,863,503 - ECD_02720 0.88 +0.1 2,863,511 + ECD_02720 0.89 -0.5 2,863,511 + ECD_02720 0.89 -1.5 2,863,624 + -0.5 2,863,628 + +0.3 2,863,628 + -0.6 2,863,628 + +0.5 2,863,629 - -0.1 2,863,629 - +0.1 2,863,678 - -0.1 2,863,688 + -0.3 2,863,700 + ECD_04357 0.17 +0.2 2,863,701 - ECD_04357 0.18 -1.2 2,863,722 + ECD_04357 0.35 -0.4 2,863,783 + ECD_04357 0.83 +0.2 2,863,783 + ECD_04357 0.83 +0.2 2,863,785 + ECD_04357 0.85 +0.1 2,863,785 + ECD_04357 0.85 +0.4 2,863,812 + +0.3 2,863,885 + -0.3 2,863,889 + +1.1 2,863,889 + +0.3 2,863,889 + -0.8 2,863,911 + -0.9 2,863,911 + -0.4 2,863,925 + +0.3 2,863,989 + ECD_02721 0.11 -0.1 2,864,017 + ECD_02721 0.17 +0.5 2,864,017 + ECD_02721 0.17 -0.2 2,864,018 - ECD_02721 0.17 -0.1 2,864,018 - ECD_02721 0.17 +1.3 2,864,018 - ECD_02721 0.17 +1.0 2,864,045 + ECD_02721 0.22 +0.1 2,864,062 + ECD_02721 0.25 +0.4 2,864,065 + ECD_02721 0.25 +0.4 2,864,065 + ECD_02721 0.25 +0.9 2,864,065 + ECD_02721 0.25 -0.6 2,864,065 + ECD_02721 0.25 -0.1 2,864,065 + ECD_02721 0.25 +0.2 2,864,065 + ECD_02721 0.25 +0.5 2,864,066 - ECD_02721 0.26 -0.0 2,864,114 + ECD_02721 0.34 -0.0 2,864,114 + ECD_02721 0.34 -0.4 2,864,115 - ECD_02721 0.34 -0.3 2,864,216 + ECD_02721 0.53 +0.0 2,864,220 + ECD_02721 0.54 -0.7 2,864,220 + ECD_02721 0.54 +0.4 2,864,220 + ECD_02721 0.54 +1.0 2,864,340 + ECD_02721 0.75 +0.1 2,864,365 + ECD_02721 0.80 +1.2 2,864,365 + ECD_02721 0.80 -0.5 2,864,365 + ECD_02721 0.80 -0.2 2,864,365 + ECD_02721 0.80 +1.3 2,864,365 + ECD_02721 0.80 +0.5 2,864,365 + ECD_02721 0.80 +0.5 2,864,366 - ECD_02721 0.80 +0.2 2,864,368 + ECD_02721 0.81 +0.3 2,864,368 + ECD_02721 0.81 +0.1 2,864,506 + -1.0 2,864,511 + +0.0 2,864,511 + -0.3 2,864,511 + -0.1 2,864,518 + +0.0 2,864,518 + +0.1
Or see this region's nucleotide sequence