Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02504 and ECD_02505 are separated by 148 nucleotides ECD_02505 and ECD_02506 are separated by 61 nucleotides ECD_02506 and ECD_02507 overlap by 11 nucleotides ECD_02507 and ECD_02508 are separated by 131 nucleotides
ECD_02504: ECD_02504 - recombination and repair protein, at 2,618,197 to 2,619,858
_02504
ECD_02505: ECD_02505 - lipoprotein component of BamABCDE OM biogenesis complex, at 2,620,007 to 2,620,348
_02505
ECD_02506: ECD_02506 - UPF0125 family protein, at 2,620,410 to 2,620,700
_02506
ECD_02507: ECD_02507 - toxic UPF0083 family protein inhibitor of 70S ribosome formation, at 2,620,690 to 2,621,166
_02507
ECD_02508: ECD_02508 - tmRNA-binding trans-translation protein, at 2,621,298 to 2,621,780
_02508
Position (kb)
2620
2621
2622 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2619.703 kb on + strand at 2619.704 kb on - strand at 2619.704 kb on - strand at 2619.819 kb on + strand at 2619.819 kb on + strand at 2619.819 kb on + strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.823 kb on - strand at 2619.823 kb on - strand at 2619.885 kb on + strand at 2619.886 kb on - strand at 2619.925 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.943 kb on - strand at 2619.945 kb on + strand at 2619.945 kb on + strand at 2619.945 kb on + strand at 2619.946 kb on - strand at 2619.946 kb on - strand at 2619.946 kb on - strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.959 kb on + strand at 2619.959 kb on + strand at 2619.959 kb on + strand at 2619.960 kb on - strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2620.006 kb on + strand at 2620.007 kb on - strand at 2620.015 kb on + strand at 2620.015 kb on + strand at 2620.041 kb on + strand at 2620.041 kb on + strand at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.045 kb on - strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.116 kb on - strand, within ECD_02505 at 2620.116 kb on - strand, within ECD_02505 at 2620.134 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.144 kb on - strand, within ECD_02505 at 2620.176 kb on - strand, within ECD_02505 at 2620.186 kb on + strand, within ECD_02505 at 2620.214 kb on - strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.220 kb on - strand, within ECD_02505 at 2620.220 kb on - strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.316 kb on - strand at 2620.322 kb on - strand at 2620.342 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.347 kb on - strand at 2620.347 kb on - strand at 2620.349 kb on + strand at 2620.352 kb on + strand at 2620.415 kb on + strand at 2620.416 kb on - strand at 2620.416 kb on - strand at 2620.478 kb on - strand, within ECD_02506 at 2620.478 kb on - strand, within ECD_02506 at 2620.516 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.553 kb on + strand, within ECD_02506 at 2620.554 kb on - strand, within ECD_02506 at 2620.554 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.692 kb on - strand at 2620.692 kb on - strand at 2620.703 kb on + strand at 2620.703 kb on + strand at 2620.703 kb on + strand at 2620.704 kb on - strand at 2620.704 kb on - strand at 2620.740 kb on + strand, within ECD_02507 at 2620.741 kb on - strand, within ECD_02507 at 2620.791 kb on + strand, within ECD_02507 at 2620.908 kb on + strand, within ECD_02507 at 2620.909 kb on - strand, within ECD_02507 at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.159 kb on - strand at 2621.159 kb on - strand at 2621.159 kb on - strand at 2621.161 kb on + strand at 2621.168 kb on + strand at 2621.179 kb on - strand at 2621.222 kb on + strand at 2621.222 kb on + strand at 2621.222 kb on + strand at 2621.227 kb on + strand at 2621.227 kb on + strand at 2621.297 kb on + strand at 2621.297 kb on + strand at 2621.318 kb on + strand at 2621.318 kb on + strand at 2621.318 kb on + strand at 2621.368 kb on - strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.461 kb on - strand, within ECD_02508 at 2621.623 kb on - strand, within ECD_02508 at 2621.623 kb on - strand, within ECD_02508 at 2621.756 kb on + strand at 2621.757 kb on - strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.796 kb on - strand at 2621.848 kb on + strand at 2621.848 kb on + strand at 2621.849 kb on - strand at 2621.911 kb on + strand at 2621.922 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2622.099 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.115 kb on + strand at 2622.117 kb on + strand at 2622.117 kb on + strand at 2622.126 kb on + strand at 2622.126 kb on + strand at 2622.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,619,703 + -0.0 2,619,704 - -0.2 2,619,704 - +1.6 2,619,819 + +0.4 2,619,819 + +0.3 2,619,819 + +0.2 2,619,820 - -0.1 2,619,820 - +0.5 2,619,820 - -1.3 2,619,820 - -0.1 2,619,820 - -0.9 2,619,820 - +1.3 2,619,820 - +0.1 2,619,823 - -0.1 2,619,823 - -1.1 2,619,885 + -0.0 2,619,886 - +2.1 2,619,925 + +1.5 2,619,942 + -0.4 2,619,942 + +0.8 2,619,942 + +0.1 2,619,942 + +0.6 2,619,942 + +0.6 2,619,942 + +0.4 2,619,942 + +0.9 2,619,943 - +0.0 2,619,945 + +0.7 2,619,945 + -0.1 2,619,945 + -0.3 2,619,946 - -0.6 2,619,946 - -0.3 2,619,946 - -0.4 2,619,956 + +0.6 2,619,956 + -0.5 2,619,956 + -0.5 2,619,956 + +0.4 2,619,956 + -0.2 2,619,956 + -0.0 2,619,956 + +0.1 2,619,956 + -0.2 2,619,956 + -0.5 2,619,959 + -0.5 2,619,959 + +0.2 2,619,959 + -1.4 2,619,960 - +0.3 2,619,974 + -1.0 2,619,974 + +0.0 2,619,974 + +0.3 2,619,974 + +0.3 2,619,974 + +0.8 2,619,974 + -0.7 2,619,974 + +0.9 2,619,974 + -0.3 2,620,006 + +0.1 2,620,007 - -0.3 2,620,015 + +0.1 2,620,015 + -0.0 2,620,041 + -0.3 2,620,041 + -0.3 2,620,044 + ECD_02505 0.11 -0.1 2,620,044 + ECD_02505 0.11 +1.3 2,620,044 + ECD_02505 0.11 +0.3 2,620,044 + ECD_02505 0.11 +0.1 2,620,044 + ECD_02505 0.11 +1.0 2,620,044 + ECD_02505 0.11 -0.0 2,620,044 + ECD_02505 0.11 +0.3 2,620,044 + ECD_02505 0.11 +0.2 2,620,044 + ECD_02505 0.11 -0.7 2,620,044 + ECD_02505 0.11 -0.2 2,620,044 + ECD_02505 0.11 +0.9 2,620,044 + ECD_02505 0.11 +0.5 2,620,044 + ECD_02505 0.11 -0.2 2,620,045 - ECD_02505 0.11 -0.0 2,620,115 + ECD_02505 0.32 -1.1 2,620,115 + ECD_02505 0.32 +0.1 2,620,115 + ECD_02505 0.32 +0.3 2,620,115 + ECD_02505 0.32 +0.1 2,620,116 - ECD_02505 0.32 +1.0 2,620,116 - ECD_02505 0.32 -0.2 2,620,134 + ECD_02505 0.37 -0.2 2,620,143 + ECD_02505 0.40 -0.1 2,620,143 + ECD_02505 0.40 -0.5 2,620,143 + ECD_02505 0.40 +0.0 2,620,143 + ECD_02505 0.40 +1.6 2,620,143 + ECD_02505 0.40 -0.6 2,620,143 + ECD_02505 0.40 -0.2 2,620,144 - ECD_02505 0.40 -0.9 2,620,176 - ECD_02505 0.49 +0.8 2,620,186 + ECD_02505 0.52 +0.1 2,620,214 - ECD_02505 0.61 +0.3 2,620,219 + ECD_02505 0.62 -0.4 2,620,219 + ECD_02505 0.62 +0.3 2,620,219 + ECD_02505 0.62 +0.1 2,620,220 - ECD_02505 0.62 -0.3 2,620,220 - ECD_02505 0.62 -0.9 2,620,229 + ECD_02505 0.65 +0.1 2,620,229 + ECD_02505 0.65 +0.8 2,620,229 + ECD_02505 0.65 +0.5 2,620,229 + ECD_02505 0.65 +0.5 2,620,229 + ECD_02505 0.65 -0.3 2,620,229 + ECD_02505 0.65 -0.2 2,620,229 + ECD_02505 0.65 +0.3 2,620,229 + ECD_02505 0.65 -0.2 2,620,229 + ECD_02505 0.65 -0.4 2,620,229 + ECD_02505 0.65 +0.4 2,620,229 + ECD_02505 0.65 +1.2 2,620,229 + ECD_02505 0.65 +0.4 2,620,229 + ECD_02505 0.65 -0.9 2,620,229 + ECD_02505 0.65 +0.4 2,620,229 + ECD_02505 0.65 -0.3 2,620,229 + ECD_02505 0.65 +0.4 2,620,229 + ECD_02505 0.65 +0.1 2,620,229 + ECD_02505 0.65 +0.2 2,620,229 + ECD_02505 0.65 -0.7 2,620,229 + ECD_02505 0.65 -1.0 2,620,229 + ECD_02505 0.65 -0.8 2,620,230 - ECD_02505 0.65 +1.1 2,620,230 - ECD_02505 0.65 -0.9 2,620,230 - ECD_02505 0.65 +0.4 2,620,230 - ECD_02505 0.65 -0.9 2,620,230 - ECD_02505 0.65 -0.4 2,620,263 + ECD_02505 0.75 +0.0 2,620,263 + ECD_02505 0.75 -0.1 2,620,263 + ECD_02505 0.75 -0.5 2,620,263 + ECD_02505 0.75 +0.2 2,620,263 + ECD_02505 0.75 -1.0 2,620,263 + ECD_02505 0.75 -0.3 2,620,263 + ECD_02505 0.75 -0.2 2,620,263 + ECD_02505 0.75 +0.6 2,620,316 - +1.3 2,620,322 - -0.9 2,620,342 + +0.0 2,620,346 + -0.6 2,620,346 + +0.4 2,620,346 + +0.9 2,620,346 + +0.5 2,620,347 - +1.0 2,620,347 - -0.1 2,620,349 + +0.5 2,620,352 + -0.1 2,620,415 + +0.3 2,620,416 - -0.2 2,620,416 - +0.5 2,620,478 - ECD_02506 0.23 -0.4 2,620,478 - ECD_02506 0.23 +0.6 2,620,516 - ECD_02506 0.36 +0.9 2,620,535 - ECD_02506 0.43 +0.7 2,620,535 - ECD_02506 0.43 +0.6 2,620,535 - ECD_02506 0.43 +0.6 2,620,553 + ECD_02506 0.49 -0.3 2,620,554 - ECD_02506 0.49 -0.1 2,620,554 - ECD_02506 0.49 -0.8 2,620,670 - ECD_02506 0.89 +0.3 2,620,670 - ECD_02506 0.89 -0.5 2,620,670 - ECD_02506 0.89 -2.0 2,620,670 - ECD_02506 0.89 +0.2 2,620,692 - +1.0 2,620,692 - +1.1 2,620,703 + +0.7 2,620,703 + -1.5 2,620,703 + -0.4 2,620,704 - -2.1 2,620,704 - +0.7 2,620,740 + ECD_02507 0.10 +0.7 2,620,741 - ECD_02507 0.11 -0.7 2,620,791 + ECD_02507 0.21 +0.1 2,620,908 + ECD_02507 0.46 -1.0 2,620,909 - ECD_02507 0.46 +0.6 2,621,158 + -0.1 2,621,158 + -1.1 2,621,158 + -0.1 2,621,158 + +0.6 2,621,159 - +0.6 2,621,159 - +0.5 2,621,159 - -0.3 2,621,161 + +0.1 2,621,168 + +0.7 2,621,179 - -0.6 2,621,222 + +0.9 2,621,222 + -0.9 2,621,222 + -0.4 2,621,227 + +0.5 2,621,227 + +0.3 2,621,297 + -0.0 2,621,297 + +0.1 2,621,318 + +1.0 2,621,318 + +1.3 2,621,318 + +0.6 2,621,368 - ECD_02508 0.14 -0.7 2,621,460 + ECD_02508 0.34 -1.3 2,621,460 + ECD_02508 0.34 +1.0 2,621,460 + ECD_02508 0.34 +3.6 2,621,461 - ECD_02508 0.34 -0.5 2,621,623 - ECD_02508 0.67 -0.7 2,621,623 - ECD_02508 0.67 -0.3 2,621,756 + -0.5 2,621,757 - +0.3 2,621,795 + -0.8 2,621,795 + -0.8 2,621,795 + -1.3 2,621,795 + +0.6 2,621,796 - +0.4 2,621,848 + +0.2 2,621,848 + +0.1 2,621,849 - +1.2 2,621,911 + +0.3 2,621,922 + +0.3 2,621,977 + -0.5 2,621,977 + -1.9 2,621,977 + -1.4 2,621,977 + +0.0 2,621,977 + -0.6 2,621,977 + -2.4 2,621,977 + +0.6 2,621,977 + -0.2 2,621,977 + -0.1 2,621,981 + +0.2 2,621,981 + -0.0 2,621,981 + -0.4 2,621,981 + +0.2 2,621,981 + +0.1 2,621,981 + +0.2 2,621,981 + -0.3 2,621,981 + +0.3 2,621,981 + -0.1 2,621,981 + -0.0 2,621,981 + -0.8 2,621,981 + -0.5 2,621,981 + +0.4 2,621,981 + -0.4 2,621,981 + +0.1 2,621,981 + +0.4 2,621,981 + +0.0 2,621,981 + +0.1 2,621,987 + -1.2 2,621,987 + -0.7 2,621,987 + -0.1 2,621,987 + +0.2 2,621,987 + +0.2 2,621,987 + -0.7 2,622,099 + -0.3 2,622,106 + -1.1 2,622,106 + -0.4 2,622,106 + -0.7 2,622,106 + +0.3 2,622,106 + -1.0 2,622,114 + +1.3 2,622,114 + +0.1 2,622,114 + -0.3 2,622,114 + -0.6 2,622,114 + -1.0 2,622,115 + +0.2 2,622,117 + -0.0 2,622,117 + -0.9 2,622,126 + +0.9 2,622,126 + -2.0 2,622,126 + -0.6
Or see this region's nucleotide sequence