Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02493 and ECD_02494 are separated by 15 nucleotides ECD_02494 and ECD_02495 are separated by 75 nucleotides ECD_02495 and ECD_02496 are separated by 41 nucleotides ECD_02496 and ECD_02497 are separated by 30 nucleotides ECD_02497 and ECD_02498 are separated by 18 nucleotides ECD_02498 and ECD_02499 are separated by 136 nucleotides
ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123
_02493
ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621
_02494
ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044
_02495
ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853
_02496
ECD_02497: ECD_02497 - ribosome maturation factor, at 2,611,884 to 2,612,432
_02497
ECD_02498: ECD_02498 - 30S ribosomal subunit protein S16, at 2,612,451 to 2,612,699
_02498
ECD_02499: ECD_02499 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs), at 2,612,836 to 2,614,197
_02499
Position (kb)
2611
2612 Strain fitness (log2 ratio)
-1
0
1
2 at 2610.121 kb on + strand at 2610.122 kb on - strand at 2610.131 kb on - strand at 2610.133 kb on - strand at 2610.179 kb on + strand at 2610.179 kb on + strand at 2610.255 kb on + strand, within ECD_02494 at 2610.255 kb on + strand, within ECD_02494 at 2610.319 kb on + strand, within ECD_02494 at 2610.367 kb on - strand, within ECD_02494 at 2610.417 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.449 kb on + strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.610 kb on - strand at 2610.610 kb on - strand at 2610.638 kb on + strand at 2612.815 kb on - strand at 2612.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,610,121 + -0.5 2,610,122 - -0.0 2,610,131 - +1.6 2,610,133 - -0.4 2,610,179 + -0.5 2,610,179 + -0.3 2,610,255 + ECD_02494 0.24 +0.5 2,610,255 + ECD_02494 0.24 +0.5 2,610,319 + ECD_02494 0.37 +0.6 2,610,367 - ECD_02494 0.47 +0.5 2,610,417 + ECD_02494 0.58 +2.1 2,610,421 + ECD_02494 0.58 +0.4 2,610,421 + ECD_02494 0.58 +1.0 2,610,421 + ECD_02494 0.58 +0.1 2,610,421 + ECD_02494 0.58 +1.0 2,610,421 + ECD_02494 0.58 -0.6 2,610,421 + ECD_02494 0.58 -0.3 2,610,422 - ECD_02494 0.59 -1.5 2,610,422 - ECD_02494 0.59 +0.5 2,610,422 - ECD_02494 0.59 +0.6 2,610,422 - ECD_02494 0.59 +0.4 2,610,422 - ECD_02494 0.59 -0.7 2,610,436 + ECD_02494 0.61 +0.6 2,610,436 + ECD_02494 0.61 -0.2 2,610,436 + ECD_02494 0.61 +0.5 2,610,436 + ECD_02494 0.61 +0.3 2,610,449 + ECD_02494 0.64 +0.0 2,610,450 - ECD_02494 0.64 +1.3 2,610,450 - ECD_02494 0.64 +0.3 2,610,450 - ECD_02494 0.64 +0.4 2,610,490 - ECD_02494 0.73 -0.7 2,610,490 - ECD_02494 0.73 +0.4 2,610,610 - +0.3 2,610,610 - -0.7 2,610,638 + -0.7 2,612,815 - +0.1 2,612,828 - -0.4
Or see this region's nucleotide sequence