Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02493 and ECD_02494 are separated by 15 nucleotides ECD_02494 and ECD_02495 are separated by 75 nucleotides ECD_02495 and ECD_02496 are separated by 41 nucleotides
ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123
_02493
ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621
_02494
ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044
_02495
ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853
_02496
Position (kb)
2610
2611 Strain fitness (log2 ratio)
-1
0
1
2 at 2609.177 kb on + strand, within ECD_02493 at 2609.185 kb on - strand, within ECD_02493 at 2609.185 kb on - strand, within ECD_02493 at 2609.216 kb on - strand, within ECD_02493 at 2609.239 kb on - strand, within ECD_02493 at 2609.255 kb on + strand, within ECD_02493 at 2609.325 kb on - strand, within ECD_02493 at 2609.361 kb on + strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.395 kb on - strand, within ECD_02493 at 2609.421 kb on + strand, within ECD_02493 at 2609.422 kb on - strand, within ECD_02493 at 2609.422 kb on - strand, within ECD_02493 at 2609.484 kb on - strand, within ECD_02493 at 2609.535 kb on + strand, within ECD_02493 at 2609.633 kb on + strand, within ECD_02493 at 2609.633 kb on + strand, within ECD_02493 at 2609.645 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.771 kb on - strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.866 kb on + strand, within ECD_02493 at 2609.902 kb on + strand, within ECD_02493 at 2609.909 kb on + strand, within ECD_02493 at 2609.910 kb on - strand, within ECD_02493 at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.121 kb on + strand at 2610.122 kb on - strand at 2610.131 kb on - strand at 2610.133 kb on - strand at 2610.179 kb on + strand at 2610.179 kb on + strand at 2610.255 kb on + strand, within ECD_02494 at 2610.255 kb on + strand, within ECD_02494 at 2610.319 kb on + strand, within ECD_02494 at 2610.367 kb on - strand, within ECD_02494 at 2610.417 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.449 kb on + strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.610 kb on - strand at 2610.610 kb on - strand at 2610.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,609,177 + ECD_02493 0.23 -0.5 2,609,185 - ECD_02493 0.23 -0.3 2,609,185 - ECD_02493 0.23 -0.2 2,609,216 - ECD_02493 0.26 -1.1 2,609,239 - ECD_02493 0.28 +0.5 2,609,255 + ECD_02493 0.29 -0.7 2,609,325 - ECD_02493 0.35 +0.2 2,609,361 + ECD_02493 0.38 +0.2 2,609,395 - ECD_02493 0.41 +1.0 2,609,395 - ECD_02493 0.41 -1.4 2,609,395 - ECD_02493 0.41 -0.7 2,609,395 - ECD_02493 0.41 +0.7 2,609,421 + ECD_02493 0.43 +0.4 2,609,422 - ECD_02493 0.43 +0.1 2,609,422 - ECD_02493 0.43 +0.8 2,609,484 - ECD_02493 0.48 -0.0 2,609,535 + ECD_02493 0.52 +0.8 2,609,633 + ECD_02493 0.60 +0.2 2,609,633 + ECD_02493 0.60 -0.1 2,609,645 + ECD_02493 0.61 +0.1 2,609,770 + ECD_02493 0.71 -0.1 2,609,770 + ECD_02493 0.71 +0.9 2,609,770 + ECD_02493 0.71 -1.7 2,609,771 - ECD_02493 0.71 -0.5 2,609,859 + ECD_02493 0.78 -0.3 2,609,859 + ECD_02493 0.78 +0.8 2,609,859 + ECD_02493 0.78 +0.0 2,609,859 + ECD_02493 0.78 +0.5 2,609,859 + ECD_02493 0.78 -0.3 2,609,860 - ECD_02493 0.78 +1.3 2,609,860 - ECD_02493 0.78 +0.2 2,609,860 - ECD_02493 0.78 +0.4 2,609,866 + ECD_02493 0.79 -0.8 2,609,902 + ECD_02493 0.82 -0.3 2,609,909 + ECD_02493 0.82 +2.1 2,609,910 - ECD_02493 0.83 -0.4 2,610,078 + -0.1 2,610,078 + -0.2 2,610,078 + +0.1 2,610,078 + +0.9 2,610,079 - +0.2 2,610,079 - -0.4 2,610,079 - +0.7 2,610,121 + -0.5 2,610,122 - -0.0 2,610,131 - +1.6 2,610,133 - -0.4 2,610,179 + -0.5 2,610,179 + -0.3 2,610,255 + ECD_02494 0.24 +0.5 2,610,255 + ECD_02494 0.24 +0.5 2,610,319 + ECD_02494 0.37 +0.6 2,610,367 - ECD_02494 0.47 +0.5 2,610,417 + ECD_02494 0.58 +2.1 2,610,421 + ECD_02494 0.58 +0.4 2,610,421 + ECD_02494 0.58 +1.0 2,610,421 + ECD_02494 0.58 +0.1 2,610,421 + ECD_02494 0.58 +1.0 2,610,421 + ECD_02494 0.58 -0.6 2,610,421 + ECD_02494 0.58 -0.3 2,610,422 - ECD_02494 0.59 -1.5 2,610,422 - ECD_02494 0.59 +0.5 2,610,422 - ECD_02494 0.59 +0.6 2,610,422 - ECD_02494 0.59 +0.4 2,610,422 - ECD_02494 0.59 -0.7 2,610,436 + ECD_02494 0.61 +0.6 2,610,436 + ECD_02494 0.61 -0.2 2,610,436 + ECD_02494 0.61 +0.5 2,610,436 + ECD_02494 0.61 +0.3 2,610,449 + ECD_02494 0.64 +0.0 2,610,450 - ECD_02494 0.64 +1.3 2,610,450 - ECD_02494 0.64 +0.3 2,610,450 - ECD_02494 0.64 +0.4 2,610,490 - ECD_02494 0.73 -0.7 2,610,490 - ECD_02494 0.73 +0.4 2,610,610 - +0.3 2,610,610 - -0.7 2,610,638 + -0.7
Or see this region's nucleotide sequence