Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02475 and ECD_02476 are separated by 206 nucleotides ECD_02476 and ECD_02477 are separated by 68 nucleotides ECD_02477 and ECD_02478 are separated by 31 nucleotides
ECD_02475: ECD_02475 - putative methyltransferase, at 2,584,091 to 2,585,128
_02475
ECD_02476: ECD_02476 - thioredoxin 2, at 2,585,335 to 2,585,754
_02476
ECD_02477: ECD_02477 - DTW domain protein, at 2,585,823 to 2,586,521
_02477
ECD_02478: ECD_02478 - protein lysine acetyltransferase, at 2,586,553 to 2,589,213
_02478
Position (kb)
2585
2586 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2584.511 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2585.050 kb on + strand at 2585.051 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.215 kb on - strand at 2585.220 kb on - strand at 2585.220 kb on - strand at 2585.220 kb on - strand at 2585.224 kb on - strand at 2585.224 kb on - strand at 2585.267 kb on + strand at 2585.272 kb on - strand at 2585.272 kb on - strand at 2585.276 kb on + strand at 2585.276 kb on + strand at 2585.330 kb on + strand at 2585.330 kb on + strand at 2585.331 kb on - strand at 2585.334 kb on + strand at 2585.335 kb on - strand at 2585.335 kb on - strand at 2585.448 kb on + strand, within ECD_02476 at 2585.492 kb on + strand, within ECD_02476 at 2585.493 kb on - strand, within ECD_02476 at 2585.649 kb on + strand, within ECD_02476 at 2585.649 kb on + strand, within ECD_02476 at 2585.653 kb on - strand, within ECD_02476 at 2585.752 kb on + strand at 2585.822 kb on + strand at 2585.960 kb on + strand, within ECD_02477 at 2586.162 kb on + strand, within ECD_02477 at 2586.221 kb on + strand, within ECD_02477 at 2586.459 kb on + strand at 2586.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,584,511 - ECD_02475 0.40 -0.1 2,584,669 - ECD_02475 0.56 +0.3 2,584,669 - ECD_02475 0.56 +0.6 2,584,669 - ECD_02475 0.56 +0.3 2,585,050 + +0.3 2,585,051 - +0.7 2,585,083 - -0.6 2,585,083 - +0.4 2,585,083 - +1.2 2,585,083 - +0.4 2,585,215 - +0.2 2,585,220 - +0.5 2,585,220 - +0.5 2,585,220 - +0.5 2,585,224 - +0.2 2,585,224 - +0.8 2,585,267 + +1.3 2,585,272 - +0.5 2,585,272 - -0.3 2,585,276 + +0.9 2,585,276 + +0.1 2,585,330 + -0.0 2,585,330 + -0.7 2,585,331 - +0.5 2,585,334 + -1.0 2,585,335 - +0.3 2,585,335 - +1.2 2,585,448 + ECD_02476 0.27 -0.1 2,585,492 + ECD_02476 0.37 +0.0 2,585,493 - ECD_02476 0.38 -1.4 2,585,649 + ECD_02476 0.75 +0.3 2,585,649 + ECD_02476 0.75 -0.3 2,585,653 - ECD_02476 0.76 -0.4 2,585,752 + -2.8 2,585,822 + +0.7 2,585,960 + ECD_02477 0.20 +0.2 2,586,162 + ECD_02477 0.48 +0.4 2,586,221 + ECD_02477 0.57 -0.6 2,586,459 + +0.0 2,586,508 + +0.0
Or see this region's nucleotide sequence