Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02455 and ECD_02456 are separated by 55 nucleotides ECD_02456 and ECD_04345 are separated by 193 nucleotides ECD_04345 and ECD_04346 overlap by 4 nucleotides ECD_04346 and ECD_02457 are separated by 271 nucleotides
ECD_02455: ECD_02455 - putative DNA-binding transcriptional regulator, at 2,565,358 to 2,566,206
_02455
ECD_02456: ECD_02456 - putative 4Fe-4S cluster-containing protein, at 2,566,262 to 2,566,522
_02456
ECD_04345: ECD_04345 - toxic membrane protein, at 2,566,716 to 2,566,796
_04345
ECD_04346: ECD_04346 - hypothetical protein, at 2,566,793 to 2,566,945
_04346
ECD_02457: ECD_02457 - holo-[acyl-carrier-protein] synthase 1, at 2,567,217 to 2,567,597
_02457
Position (kb)
2566
2567 Strain fitness (log2 ratio)
-2
-1
0
1 at 2565.369 kb on - strand at 2565.437 kb on + strand at 2565.437 kb on + strand at 2565.536 kb on - strand, within ECD_02455 at 2565.555 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.705 kb on + strand, within ECD_02455 at 2565.708 kb on + strand, within ECD_02455 at 2565.855 kb on + strand, within ECD_02455 at 2565.878 kb on + strand, within ECD_02455 at 2566.043 kb on - strand, within ECD_02455 at 2566.044 kb on + strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455 at 2566.261 kb on + strand at 2566.369 kb on + strand, within ECD_02456 at 2566.370 kb on - strand, within ECD_02456 at 2566.436 kb on - strand, within ECD_02456 at 2566.551 kb on + strand at 2566.654 kb on + strand at 2566.841 kb on + strand, within ECD_04346 at 2566.841 kb on + strand, within ECD_04346 at 2566.841 kb on + strand, within ECD_04346 at 2566.992 kb on + strand at 2567.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,565,369 - -0.2 2,565,437 + -0.5 2,565,437 + +0.5 2,565,536 - ECD_02455 0.21 -0.8 2,565,555 + ECD_02455 0.23 +0.4 2,565,688 + ECD_02455 0.39 +0.3 2,565,688 + ECD_02455 0.39 +0.5 2,565,688 + ECD_02455 0.39 +0.1 2,565,688 + ECD_02455 0.39 +0.1 2,565,689 - ECD_02455 0.39 -1.0 2,565,689 - ECD_02455 0.39 +0.4 2,565,705 + ECD_02455 0.41 +0.6 2,565,708 + ECD_02455 0.41 -0.0 2,565,855 + ECD_02455 0.59 +0.2 2,565,878 + ECD_02455 0.61 +0.3 2,566,043 - ECD_02455 0.81 -0.1 2,566,044 + ECD_02455 0.81 +0.3 2,566,045 - ECD_02455 0.81 -1.4 2,566,045 - ECD_02455 0.81 -0.1 2,566,261 + +0.3 2,566,369 + ECD_02456 0.41 +0.3 2,566,370 - ECD_02456 0.41 -1.9 2,566,436 - ECD_02456 0.67 +0.2 2,566,551 + +0.4 2,566,654 + -1.1 2,566,841 + ECD_04346 0.31 +0.6 2,566,841 + ECD_04346 0.31 -0.6 2,566,841 + ECD_04346 0.31 +0.9 2,566,992 + -0.0 2,567,108 + +0.1
Or see this region's nucleotide sequence