Strain Fitness in Escherichia coli BL21 around ECD_02413

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02412 and ECD_02413 are separated by 206 nucleotidesECD_02413 and ECD_04290 are separated by 83 nucleotidesECD_04290 and ECD_04289 overlap by 4 nucleotides ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767 _02412 ECD_02413: ECD_02413 - 3-mercaptopyruvate sulfurtransferase, at 2,516,974 to 2,517,819 _02413 ECD_04290: ECD_04290 - transposase, at 2,517,903 to 2,518,424 _04290 ECD_04289: ECD_04289 - transposase, at 2,518,421 to 2,519,260 _04289 Position (kb) 2516 2517 2518Strain fitness (log2 ratio) -1 0 1at 2516.189 kb on - strand, within ECD_02412at 2516.191 kb on + strand, within ECD_02412at 2516.191 kb on + strand, within ECD_02412at 2516.292 kb on - strandat 2516.391 kb on - strandat 2516.405 kb on - strandat 2516.410 kb on + strandat 2516.656 kb on + strandat 2516.735 kb on + strandat 2516.735 kb on + strandat 2516.736 kb on - strandat 2516.808 kb on - strandat 2516.828 kb on + strandat 2516.837 kb on + strandat 2516.837 kb on + strandat 2516.856 kb on + strandat 2516.857 kb on - strandat 2516.857 kb on - strandat 2516.928 kb on - strandat 2516.973 kb on + strandat 2517.098 kb on - strand, within ECD_02413at 2517.112 kb on - strand, within ECD_02413at 2517.261 kb on + strand, within ECD_02413at 2517.261 kb on + strand, within ECD_02413at 2517.386 kb on + strand, within ECD_02413at 2517.420 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.452 kb on + strand, within ECD_02413at 2517.545 kb on + strand, within ECD_02413at 2517.661 kb on + strand, within ECD_02413

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,516,189 - ECD_02412 0.88 -0.8
2,516,191 + ECD_02412 0.88 -0.4
2,516,191 + ECD_02412 0.88 -0.4
2,516,292 - +0.3
2,516,391 - -0.5
2,516,405 - +0.3
2,516,410 + -0.0
2,516,656 + +0.9
2,516,735 + -0.1
2,516,735 + -0.1
2,516,736 - -1.0
2,516,808 - +0.3
2,516,828 + +0.9
2,516,837 + -0.1
2,516,837 + +1.4
2,516,856 + -1.0
2,516,857 - +0.7
2,516,857 - +1.1
2,516,928 - +0.2
2,516,973 + +0.8
2,517,098 - ECD_02413 0.15 -0.7
2,517,112 - ECD_02413 0.16 -0.3
2,517,261 + ECD_02413 0.34 -1.1
2,517,261 + ECD_02413 0.34 -0.4
2,517,386 + ECD_02413 0.49 -0.1
2,517,420 + ECD_02413 0.53 -0.4
2,517,452 + ECD_02413 0.57 -0.0
2,517,452 + ECD_02413 0.57 +0.3
2,517,452 + ECD_02413 0.57 +0.1
2,517,545 + ECD_02413 0.67 -0.5
2,517,661 + ECD_02413 0.81 -0.6

Or see this region's nucleotide sequence