Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02412 and ECD_02413 are separated by 206 nucleotides ECD_02413 and ECD_04290 are separated by 83 nucleotides ECD_04290 and ECD_04289 overlap by 4 nucleotides
ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767
_02412
ECD_02413: ECD_02413 - 3-mercaptopyruvate sulfurtransferase, at 2,516,974 to 2,517,819
_02413
ECD_04290: ECD_04290 - transposase, at 2,517,903 to 2,518,424
_04290
ECD_04289: ECD_04289 - transposase, at 2,518,421 to 2,519,260
_04289
Position (kb)
2516
2517
2518 Strain fitness (log2 ratio)
-1
0
1 at 2516.189 kb on - strand, within ECD_02412 at 2516.191 kb on + strand, within ECD_02412 at 2516.191 kb on + strand, within ECD_02412 at 2516.292 kb on - strand at 2516.391 kb on - strand at 2516.405 kb on - strand at 2516.410 kb on + strand at 2516.656 kb on + strand at 2516.735 kb on + strand at 2516.735 kb on + strand at 2516.736 kb on - strand at 2516.808 kb on - strand at 2516.828 kb on + strand at 2516.837 kb on + strand at 2516.837 kb on + strand at 2516.856 kb on + strand at 2516.857 kb on - strand at 2516.857 kb on - strand at 2516.928 kb on - strand at 2516.973 kb on + strand at 2517.098 kb on - strand, within ECD_02413 at 2517.112 kb on - strand, within ECD_02413 at 2517.261 kb on + strand, within ECD_02413 at 2517.261 kb on + strand, within ECD_02413 at 2517.386 kb on + strand, within ECD_02413 at 2517.420 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.545 kb on + strand, within ECD_02413 at 2517.661 kb on + strand, within ECD_02413
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,516,189 - ECD_02412 0.88 -0.8 2,516,191 + ECD_02412 0.88 -0.4 2,516,191 + ECD_02412 0.88 -0.4 2,516,292 - +0.3 2,516,391 - -0.5 2,516,405 - +0.3 2,516,410 + -0.0 2,516,656 + +0.9 2,516,735 + -0.1 2,516,735 + -0.1 2,516,736 - -1.0 2,516,808 - +0.3 2,516,828 + +0.9 2,516,837 + -0.1 2,516,837 + +1.4 2,516,856 + -1.0 2,516,857 - +0.7 2,516,857 - +1.1 2,516,928 - +0.2 2,516,973 + +0.8 2,517,098 - ECD_02413 0.15 -0.7 2,517,112 - ECD_02413 0.16 -0.3 2,517,261 + ECD_02413 0.34 -1.1 2,517,261 + ECD_02413 0.34 -0.4 2,517,386 + ECD_02413 0.49 -0.1 2,517,420 + ECD_02413 0.53 -0.4 2,517,452 + ECD_02413 0.57 -0.0 2,517,452 + ECD_02413 0.57 +0.3 2,517,452 + ECD_02413 0.57 +0.1 2,517,545 + ECD_02413 0.67 -0.5 2,517,661 + ECD_02413 0.81 -0.6
Or see this region's nucleotide sequence