Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02399 and ECD_02400 are separated by 68 nucleotides ECD_02400 and ECD_02401 are separated by 161 nucleotides
ECD_02399: ECD_02399 - GMP synthetase (glutamine aminotransferase), at 2,495,438 to 2,497,015
_02399
ECD_02400: ECD_02400 - IMP dehydrogenase, at 2,497,084 to 2,498,550
_02400
ECD_02401: ECD_02401 - exonuclease VII, large subunit, at 2,498,712 to 2,500,082
_02401
Position (kb)
2497
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2496.167 kb on - strand, within ECD_02399 at 2496.332 kb on - strand, within ECD_02399 at 2496.490 kb on - strand, within ECD_02399 at 2496.490 kb on - strand, within ECD_02399 at 2496.669 kb on - strand, within ECD_02399 at 2496.796 kb on - strand, within ECD_02399 at 2496.830 kb on - strand, within ECD_02399 at 2497.050 kb on - strand at 2497.120 kb on - strand at 2497.207 kb on - strand at 2497.207 kb on - strand at 2497.228 kb on - strand at 2497.472 kb on - strand, within ECD_02400 at 2497.597 kb on - strand, within ECD_02400 at 2497.636 kb on - strand, within ECD_02400 at 2497.642 kb on - strand, within ECD_02400 at 2497.753 kb on - strand, within ECD_02400 at 2497.753 kb on - strand, within ECD_02400 at 2497.781 kb on - strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.546 kb on - strand at 2498.598 kb on + strand at 2498.716 kb on + strand at 2499.169 kb on + strand, within ECD_02401 at 2499.169 kb on + strand, within ECD_02401 at 2499.176 kb on + strand, within ECD_02401 at 2499.310 kb on + strand, within ECD_02401
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,496,167 - ECD_02399 0.46 -0.3 2,496,332 - ECD_02399 0.57 -1.5 2,496,490 - ECD_02399 0.67 -0.3 2,496,490 - ECD_02399 0.67 +0.3 2,496,669 - ECD_02399 0.78 -1.7 2,496,796 - ECD_02399 0.86 -1.0 2,496,830 - ECD_02399 0.88 -1.3 2,497,050 - +0.1 2,497,120 - -1.1 2,497,207 - -0.5 2,497,207 - -1.9 2,497,228 - -0.8 2,497,472 - ECD_02400 0.26 -1.4 2,497,597 - ECD_02400 0.35 +0.3 2,497,636 - ECD_02400 0.38 -0.7 2,497,642 - ECD_02400 0.38 -1.7 2,497,753 - ECD_02400 0.46 -1.9 2,497,753 - ECD_02400 0.46 -2.0 2,497,781 - ECD_02400 0.48 +0.1 2,498,096 + ECD_02400 0.69 -0.7 2,498,096 + ECD_02400 0.69 -1.5 2,498,097 - ECD_02400 0.69 +0.1 2,498,097 - ECD_02400 0.69 +0.7 2,498,097 - ECD_02400 0.69 -3.2 2,498,546 - -1.5 2,498,598 + +0.3 2,498,716 + +0.3 2,499,169 + ECD_02401 0.33 -0.2 2,499,169 + ECD_02401 0.33 +0.2 2,499,176 + ECD_02401 0.34 +0.3 2,499,310 + ECD_02401 0.44 -1.0
Or see this region's nucleotide sequence