Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02354 and ECD_02355 are separated by 288 nucleotides ECD_02355 and ECD_02356 are separated by 19 nucleotides
ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866
_02354
ECD_02355: ECD_02355 - transaldolase A, at 2,443,155 to 2,444,105
_02355
ECD_02356: ECD_02356 - transketolase 2, thiamine triphosphate-binding, at 2,444,125 to 2,446,128
_02356
Position (kb)
2443
2444
2445 Strain fitness (log2 ratio)
-1
0
1
2 at 2442.224 kb on + strand, within ECD_02354 at 2442.225 kb on - strand, within ECD_02354 at 2442.434 kb on - strand, within ECD_02354 at 2442.550 kb on - strand, within ECD_02354 at 2442.648 kb on - strand at 2442.899 kb on - strand at 2442.943 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.997 kb on - strand at 2443.040 kb on + strand at 2443.285 kb on + strand, within ECD_02355 at 2443.294 kb on - strand, within ECD_02355 at 2443.304 kb on - strand, within ECD_02355 at 2443.602 kb on - strand, within ECD_02355 at 2443.604 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.785 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.791 kb on - strand, within ECD_02355 at 2443.930 kb on + strand, within ECD_02355 at 2443.934 kb on + strand, within ECD_02355 at 2443.934 kb on + strand, within ECD_02355 at 2444.101 kb on + strand at 2444.102 kb on - strand at 2444.122 kb on + strand at 2444.122 kb on + strand at 2444.123 kb on - strand at 2444.123 kb on - strand at 2444.124 kb on + strand at 2444.124 kb on + strand at 2444.124 kb on + strand at 2444.125 kb on - strand at 2444.125 kb on - strand at 2444.284 kb on + strand at 2444.285 kb on - strand at 2444.285 kb on - strand at 2444.345 kb on + strand, within ECD_02356 at 2444.346 kb on - strand, within ECD_02356 at 2444.346 kb on - strand, within ECD_02356 at 2444.436 kb on + strand, within ECD_02356 at 2444.514 kb on + strand, within ECD_02356 at 2444.569 kb on + strand, within ECD_02356 at 2444.570 kb on - strand, within ECD_02356 at 2444.889 kb on + strand, within ECD_02356 at 2444.889 kb on + strand, within ECD_02356
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,442,224 + ECD_02354 0.72 +1.1 2,442,225 - ECD_02354 0.72 +0.3 2,442,434 - ECD_02354 0.81 -0.3 2,442,550 - ECD_02354 0.86 +1.0 2,442,648 - -0.0 2,442,899 - +1.0 2,442,943 - -0.1 2,442,946 - -1.1 2,442,946 - +1.0 2,442,946 - +0.5 2,442,946 - +0.3 2,442,997 - -0.0 2,443,040 + -0.2 2,443,285 + ECD_02355 0.14 -0.4 2,443,294 - ECD_02355 0.15 +0.0 2,443,304 - ECD_02355 0.16 -0.7 2,443,602 - ECD_02355 0.47 +0.2 2,443,604 + ECD_02355 0.47 -0.5 2,443,779 + ECD_02355 0.66 +0.2 2,443,779 + ECD_02355 0.66 +0.6 2,443,785 + ECD_02355 0.66 -0.6 2,443,790 + ECD_02355 0.67 -0.5 2,443,790 + ECD_02355 0.67 +0.2 2,443,791 - ECD_02355 0.67 +0.4 2,443,930 + ECD_02355 0.81 -1.4 2,443,934 + ECD_02355 0.82 -0.2 2,443,934 + ECD_02355 0.82 -1.5 2,444,101 + +0.0 2,444,102 - +0.2 2,444,122 + +0.1 2,444,122 + +0.5 2,444,123 - -0.2 2,444,123 - +0.0 2,444,124 + -0.9 2,444,124 + +0.3 2,444,124 + +0.7 2,444,125 - +0.1 2,444,125 - +1.4 2,444,284 + +0.5 2,444,285 - +2.3 2,444,285 - -0.1 2,444,345 + ECD_02356 0.11 -0.9 2,444,346 - ECD_02356 0.11 -0.7 2,444,346 - ECD_02356 0.11 +0.1 2,444,436 + ECD_02356 0.16 +0.3 2,444,514 + ECD_02356 0.19 +1.6 2,444,569 + ECD_02356 0.22 +0.7 2,444,570 - ECD_02356 0.22 -0.4 2,444,889 + ECD_02356 0.38 -0.6 2,444,889 + ECD_02356 0.38 -0.5
Or see this region's nucleotide sequence