Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02306 and ECD_t00041 are separated by 258 nucleotides ECD_t00041 and ECD_t00042 are separated by 44 nucleotides ECD_t00042 and ECD_t00043 are separated by 46 nucleotides ECD_t00043 and ECD_t00044 are separated by 4 nucleotides ECD_t00044 and ECD_02307 are separated by 119 nucleotides ECD_02307 and ECD_02308 overlap by 10 nucleotides
ECD_02306: ECD_02306 - glutamyl-tRNA synthetase, at 2,395,794 to 2,397,209
_02306
ECD_t00041: ECD_t00041 - tRNA-Val, at 2,397,468 to 2,397,543
_t00041
ECD_t00042: ECD_t00042 - tRNA-Val, at 2,397,588 to 2,397,663
_t00042
ECD_t00043: ECD_t00043 - tRNA-Val, at 2,397,710 to 2,397,785
_t00043
ECD_t00044: ECD_t00044 - tRNA-Lys, at 2,397,790 to 2,397,865
_t00044
ECD_02307: ECD_02307 - hypothetical protein, at 2,397,985 to 2,398,326
_02307
ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243
_02308
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-1
0
1 at 2397.280 kb on - strand at 2397.306 kb on - strand at 2397.319 kb on - strand at 2397.324 kb on - strand at 2397.501 kb on + strand, within ECD_t00041 at 2397.546 kb on + strand at 2397.546 kb on + strand at 2397.551 kb on + strand at 2397.551 kb on + strand at 2397.551 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.569 kb on + strand at 2397.677 kb on + strand at 2397.743 kb on + strand, within ECD_t00043 at 2397.957 kb on + strand at 2397.957 kb on + strand at 2397.965 kb on - strand at 2398.019 kb on + strand at 2398.036 kb on - strand, within ECD_02307 at 2398.134 kb on + strand, within ECD_02307 at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.321 kb on - strand at 2398.473 kb on + strand, within ECD_02308 at 2398.523 kb on + strand, within ECD_02308 at 2398.699 kb on + strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.880 kb on + strand, within ECD_02308 at 2398.881 kb on - strand, within ECD_02308 at 2399.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,397,280 - -0.2 2,397,306 - -0.1 2,397,319 - -0.6 2,397,324 - +1.0 2,397,501 + ECD_t00041 0.43 +0.0 2,397,546 + -0.5 2,397,546 + +0.1 2,397,551 + +0.3 2,397,551 + +0.3 2,397,551 + +0.3 2,397,555 + -0.8 2,397,555 + -0.2 2,397,555 + +0.4 2,397,555 + -0.0 2,397,555 + +0.5 2,397,569 + +0.2 2,397,677 + +0.2 2,397,743 + ECD_t00043 0.43 +0.2 2,397,957 + -1.2 2,397,957 + -0.3 2,397,965 - +0.3 2,398,019 + +0.1 2,398,036 - ECD_02307 0.15 +0.6 2,398,134 + ECD_02307 0.44 +0.9 2,398,318 + -0.8 2,398,318 + +0.4 2,398,318 + +0.4 2,398,318 + -0.3 2,398,321 - +0.4 2,398,473 + ECD_02308 0.17 +0.4 2,398,523 + ECD_02308 0.22 -0.1 2,398,699 + ECD_02308 0.41 +0.5 2,398,700 - ECD_02308 0.41 +0.3 2,398,700 - ECD_02308 0.41 -0.5 2,398,700 - ECD_02308 0.41 -0.1 2,398,880 + ECD_02308 0.61 -1.1 2,398,881 - ECD_02308 0.61 -0.6 2,399,306 + +0.6
Or see this region's nucleotide sequence