Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02303 and ECD_t00039 are separated by 208 nucleotides ECD_t00039 and ECD_t00040 are separated by 39 nucleotides ECD_t00040 and ECD_02304 are separated by 235 nucleotides ECD_02304 and ECD_02305 are separated by 1 nucleotides ECD_02305 and ECD_02306 are separated by 51 nucleotides
ECD_02303: ECD_02303 - putative diguanylate cyclase, at 2,392,180 to 2,394,369
_02303
ECD_t00039: ECD_t00039 - tRNA-Ala, at 2,394,578 to 2,394,653
_t00039
ECD_t00040: ECD_t00040 - tRNA-Ala, at 2,394,693 to 2,394,768
_t00040
ECD_02304: ECD_02304 - DUF1323 family putative DNA-binding protein, at 2,395,004 to 2,395,348
_02304
ECD_02305: ECD_02305 - DUF1323 family putative DNA-binding protein, at 2,395,350 to 2,395,742
_02305
ECD_02306: ECD_02306 - glutamyl-tRNA synthetase, at 2,395,794 to 2,397,209
_02306
Position (kb)
2395
2396 Strain fitness (log2 ratio)
-1
0
1 at 2394.379 kb on - strand at 2394.508 kb on + strand at 2394.509 kb on - strand at 2394.588 kb on - strand, within ECD_t00039 at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.776 kb on - strand at 2394.806 kb on - strand at 2394.911 kb on + strand at 2394.912 kb on - strand at 2394.945 kb on + strand at 2394.955 kb on + strand at 2394.972 kb on - strand at 2394.972 kb on - strand at 2395.057 kb on + strand, within ECD_02304 at 2395.057 kb on + strand, within ECD_02304 at 2395.057 kb on + strand, within ECD_02304 at 2395.228 kb on - strand, within ECD_02304 at 2395.279 kb on + strand, within ECD_02304 at 2395.280 kb on - strand, within ECD_02304 at 2395.346 kb on + strand at 2395.346 kb on + strand at 2395.346 kb on + strand at 2395.349 kb on + strand at 2395.409 kb on + strand, within ECD_02305 at 2395.524 kb on - strand, within ECD_02305 at 2395.647 kb on - strand, within ECD_02305 at 2395.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,394,379 - -0.0 2,394,508 + -1.7 2,394,509 - +0.2 2,394,588 - ECD_t00039 0.13 -0.0 2,394,646 - -0.8 2,394,646 - +0.8 2,394,646 - +0.1 2,394,646 - +0.8 2,394,646 - -0.5 2,394,646 - +0.6 2,394,646 - +0.9 2,394,646 - -1.6 2,394,776 - +0.6 2,394,806 - -1.3 2,394,911 + +0.9 2,394,912 - -0.2 2,394,945 + +0.0 2,394,955 + +0.6 2,394,972 - -0.0 2,394,972 - -0.4 2,395,057 + ECD_02304 0.15 +0.0 2,395,057 + ECD_02304 0.15 +1.6 2,395,057 + ECD_02304 0.15 -0.5 2,395,228 - ECD_02304 0.65 -0.1 2,395,279 + ECD_02304 0.80 +0.5 2,395,280 - ECD_02304 0.80 -0.1 2,395,346 + +0.3 2,395,346 + +0.1 2,395,346 + +0.6 2,395,349 + -0.2 2,395,409 + ECD_02305 0.15 -0.8 2,395,524 - ECD_02305 0.44 +0.4 2,395,647 - ECD_02305 0.76 -1.4 2,395,792 - -0.9
Or see this region's nucleotide sequence