Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02249 and ECD_02250 are separated by 120 nucleotides ECD_02250 and ECD_02251 are separated by 33 nucleotides ECD_02251 and ECD_02252 overlap by 1 nucleotides
ECD_02249: ECD_02249 - fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme, at 2,329,017 to 2,331,023
_02249
ECD_02250: ECD_02250 - uncharacterized protein, at 2,331,144 to 2,331,422
_02250
ECD_02251: ECD_02251 - Elongation Factor P Lys34 hydroxylase, at 2,331,456 to 2,332,004
_02251
ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813
_02252
Position (kb)
2331
2332 Strain fitness (log2 ratio)
-1
0
1
2 at 2330.210 kb on + strand, within ECD_02249 at 2330.211 kb on - strand, within ECD_02249 at 2330.383 kb on + strand, within ECD_02249 at 2330.565 kb on - strand, within ECD_02249 at 2330.846 kb on + strand at 2330.860 kb on + strand at 2331.073 kb on + strand at 2331.073 kb on + strand at 2331.074 kb on - strand at 2331.261 kb on - strand, within ECD_02250 at 2331.512 kb on - strand, within ECD_02251 at 2331.515 kb on - strand, within ECD_02251 at 2331.572 kb on - strand, within ECD_02251 at 2331.592 kb on - strand, within ECD_02251 at 2331.880 kb on - strand, within ECD_02251 at 2331.902 kb on - strand, within ECD_02251 at 2331.939 kb on - strand, within ECD_02251 at 2331.963 kb on - strand at 2332.005 kb on + strand at 2332.006 kb on - strand at 2332.006 kb on - strand at 2332.056 kb on - strand at 2332.395 kb on + strand, within ECD_02252
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,330,210 + ECD_02249 0.59 +0.9 2,330,211 - ECD_02249 0.59 +1.0 2,330,383 + ECD_02249 0.68 +0.2 2,330,565 - ECD_02249 0.77 -0.8 2,330,846 + -0.3 2,330,860 + +0.0 2,331,073 + -0.1 2,331,073 + +0.6 2,331,074 - +1.9 2,331,261 - ECD_02250 0.42 -0.9 2,331,512 - ECD_02251 0.10 +0.0 2,331,515 - ECD_02251 0.11 -0.0 2,331,572 - ECD_02251 0.21 +0.3 2,331,592 - ECD_02251 0.25 +0.2 2,331,880 - ECD_02251 0.77 +0.7 2,331,902 - ECD_02251 0.81 -0.1 2,331,939 - ECD_02251 0.88 -0.5 2,331,963 - +0.6 2,332,005 + +0.2 2,332,006 - -0.3 2,332,006 - -0.3 2,332,056 - +0.3 2,332,395 + ECD_02252 0.48 -0.8
Or see this region's nucleotide sequence