Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02242 and ECD_02243 are separated by 82 nucleotides ECD_02243 and ECD_02244 overlap by 1 nucleotides ECD_02244 and ECD_02245 are separated by 65 nucleotides
ECD_02242: ECD_02242 - DedA family inner membrane protein, at 2,321,335 to 2,321,994
_02242
ECD_02243: ECD_02243 - tRNA pseudouridine(38-40) synthase, at 2,322,077 to 2,322,889
_02243
ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902
_02244
ECD_02245: ECD_02245 - erythronate-4-phosphate dehydrogenase, at 2,323,968 to 2,325,104
_02245
Position (kb)
2322
2323
2324 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2322.012 kb on - strand at 2322.032 kb on + strand at 2322.033 kb on - strand at 2322.070 kb on - strand at 2322.272 kb on - strand, within ECD_02243 at 2322.284 kb on - strand, within ECD_02243 at 2322.325 kb on - strand, within ECD_02243 at 2322.523 kb on - strand, within ECD_02243 at 2322.532 kb on - strand, within ECD_02243 at 2322.582 kb on - strand, within ECD_02243 at 2322.894 kb on - strand at 2323.055 kb on - strand, within ECD_02244 at 2323.093 kb on - strand, within ECD_02244 at 2323.179 kb on - strand, within ECD_02244 at 2323.184 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.447 kb on - strand, within ECD_02244 at 2323.565 kb on - strand, within ECD_02244 at 2323.970 kb on - strand at 2324.007 kb on - strand at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.273 kb on + strand, within ECD_02245 at 2324.283 kb on - strand, within ECD_02245 at 2324.425 kb on - strand, within ECD_02245 at 2324.761 kb on + strand, within ECD_02245 at 2324.762 kb on - strand, within ECD_02245 at 2324.813 kb on - strand, within ECD_02245 at 2324.835 kb on - strand, within ECD_02245
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,322,012 - -0.0 2,322,032 + -0.6 2,322,033 - -0.2 2,322,070 - +0.6 2,322,272 - ECD_02243 0.24 -0.4 2,322,284 - ECD_02243 0.25 -1.4 2,322,325 - ECD_02243 0.31 -0.4 2,322,523 - ECD_02243 0.55 -1.1 2,322,532 - ECD_02243 0.56 -2.4 2,322,582 - ECD_02243 0.62 -1.4 2,322,894 - -1.7 2,323,055 - ECD_02244 0.16 +0.4 2,323,093 - ECD_02244 0.20 -2.9 2,323,179 - ECD_02244 0.29 -0.4 2,323,184 - ECD_02244 0.29 -0.4 2,323,279 - ECD_02244 0.38 -0.8 2,323,279 - ECD_02244 0.38 -0.4 2,323,447 - ECD_02244 0.55 +0.7 2,323,565 - ECD_02244 0.67 -2.1 2,323,970 - -0.0 2,324,007 - -1.0 2,324,155 + ECD_02245 0.16 +0.2 2,324,155 + ECD_02245 0.16 -1.8 2,324,155 + ECD_02245 0.16 -0.6 2,324,155 + ECD_02245 0.16 -1.1 2,324,273 + ECD_02245 0.27 +0.2 2,324,283 - ECD_02245 0.28 -0.0 2,324,425 - ECD_02245 0.40 +0.2 2,324,761 + ECD_02245 0.70 -1.0 2,324,762 - ECD_02245 0.70 -1.0 2,324,813 - ECD_02245 0.74 -0.7 2,324,835 - ECD_02245 0.76 -1.1
Or see this region's nucleotide sequence