Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02235 and ECD_02236 are separated by 265 nucleotides ECD_02236 and ECD_02237 are separated by 94 nucleotides
ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044
_02235
ECD_02236: ECD_02236 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,315,310 to 2,315,879
_02236
ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491
_02237
Position (kb)
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2314.379 kb on - strand, within ECD_02235 at 2314.411 kb on - strand, within ECD_02235 at 2314.502 kb on + strand, within ECD_02235 at 2314.503 kb on - strand, within ECD_02235 at 2314.540 kb on - strand, within ECD_02235 at 2314.561 kb on - strand, within ECD_02235 at 2314.606 kb on - strand, within ECD_02235 at 2314.844 kb on - strand, within ECD_02235 at 2314.912 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.962 kb on - strand, within ECD_02235 at 2314.984 kb on - strand at 2315.049 kb on - strand at 2315.049 kb on - strand at 2315.083 kb on + strand at 2315.122 kb on + strand at 2315.312 kb on - strand at 2315.880 kb on - strand at 2315.884 kb on - strand at 2316.042 kb on + strand at 2316.043 kb on - strand at 2316.047 kb on - strand at 2316.051 kb on + strand at 2316.276 kb on - strand, within ECD_02237 at 2316.318 kb on - strand, within ECD_02237 at 2316.460 kb on - strand, within ECD_02237 at 2316.546 kb on + strand, within ECD_02237 at 2316.716 kb on + strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.722 kb on + strand, within ECD_02237 at 2316.798 kb on - strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,314,379 - ECD_02235 0.15 -0.8 2,314,411 - ECD_02235 0.19 +0.2 2,314,502 + ECD_02235 0.31 +1.0 2,314,503 - ECD_02235 0.31 -0.2 2,314,540 - ECD_02235 0.36 -0.1 2,314,561 - ECD_02235 0.38 +0.1 2,314,606 - ECD_02235 0.44 +0.5 2,314,844 - ECD_02235 0.74 +1.0 2,314,912 + ECD_02235 0.83 -0.2 2,314,938 + ECD_02235 0.86 +0.7 2,314,938 + ECD_02235 0.86 -0.2 2,314,938 + ECD_02235 0.86 +0.2 2,314,958 - ECD_02235 0.89 +0.6 2,314,958 - ECD_02235 0.89 -0.4 2,314,962 - ECD_02235 0.89 -0.4 2,314,984 - +1.5 2,315,049 - +0.2 2,315,049 - +0.1 2,315,083 + -0.6 2,315,122 + -0.5 2,315,312 - +0.7 2,315,880 - +0.4 2,315,884 - +0.0 2,316,042 + -1.9 2,316,043 - +0.3 2,316,047 - -2.5 2,316,051 + -1.7 2,316,276 - ECD_02237 0.20 -2.6 2,316,318 - ECD_02237 0.23 -1.8 2,316,460 - ECD_02237 0.32 -1.5 2,316,546 + ECD_02237 0.38 -0.9 2,316,716 + ECD_02237 0.49 +0.2 2,316,717 - ECD_02237 0.49 +0.4 2,316,717 - ECD_02237 0.49 -1.3 2,316,717 - ECD_02237 0.49 -0.4 2,316,718 + ECD_02237 0.49 -1.8 2,316,718 + ECD_02237 0.49 +0.0 2,316,722 + ECD_02237 0.49 -1.1 2,316,798 - ECD_02237 0.54 -1.7 2,316,878 + ECD_02237 0.60 -0.4 2,316,878 + ECD_02237 0.60 -0.4 2,316,879 - ECD_02237 0.60 -1.4 2,316,879 - ECD_02237 0.60 -1.0 2,316,879 - ECD_02237 0.60 +1.2 2,316,879 - ECD_02237 0.60 -3.2
Or see this region's nucleotide sequence