Strain Fitness in Escherichia coli BL21 around ECD_02219

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02217 and ECD_02218 are separated by 86 nucleotidesECD_02218 and ECD_02219 are separated by 10 nucleotidesECD_02219 and ECD_02220 are separated by 82 nucleotidesECD_02220 and ECD_02221 are separated by 338 nucleotides ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604 _02217 ECD_02218: ECD_02218 - sugar phosphatase, at 2,298,691 to 2,299,341 _02218 ECD_02219: ECD_02219 - UPF0304 family protein, at 2,299,352 to 2,299,846 _02219 ECD_02220: ECD_02220 - UPF0208 family inner membrane protein, at 2,299,929 to 2,300,384 _02220 ECD_02221: ECD_02221 - acetate kinase A and propionate kinase 2, at 2,300,723 to 2,301,925 _02221 Position (kb) 2299 2300Strain fitness (log2 ratio) -2 -1 0 1at 2298.440 kb on - strandat 2298.440 kb on - strandat 2298.461 kb on + strandat 2298.461 kb on + strandat 2298.703 kb on - strandat 2298.732 kb on + strandat 2298.911 kb on + strand, within ECD_02218at 2298.912 kb on - strand, within ECD_02218at 2298.985 kb on + strand, within ECD_02218at 2299.045 kb on - strand, within ECD_02218at 2299.045 kb on - strand, within ECD_02218at 2299.053 kb on + strand, within ECD_02218at 2299.364 kb on - strandat 2299.423 kb on + strand, within ECD_02219at 2299.531 kb on - strand, within ECD_02219at 2299.531 kb on - strand, within ECD_02219at 2299.531 kb on - strand, within ECD_02219at 2299.642 kb on - strand, within ECD_02219at 2299.642 kb on - strand, within ECD_02219at 2299.642 kb on - strand, within ECD_02219at 2299.664 kb on - strand, within ECD_02219at 2299.722 kb on - strand, within ECD_02219at 2299.742 kb on - strand, within ECD_02219at 2299.789 kb on + strand, within ECD_02219at 2299.804 kb on - strandat 2299.820 kb on - strandat 2299.820 kb on - strandat 2299.859 kb on + strandat 2299.860 kb on - strandat 2299.860 kb on - strandat 2299.870 kb on + strandat 2299.896 kb on - strandat 2300.082 kb on - strand, within ECD_02220at 2300.214 kb on - strand, within ECD_02220at 2300.349 kb on - strandat 2300.407 kb on - strandat 2300.514 kb on + strandat 2300.521 kb on + strandat 2300.546 kb on + strandat 2300.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,298,440 - +0.8
2,298,440 - -0.9
2,298,461 + +1.2
2,298,461 + -0.0
2,298,703 - -0.3
2,298,732 + -0.2
2,298,911 + ECD_02218 0.34 -0.3
2,298,912 - ECD_02218 0.34 -0.1
2,298,985 + ECD_02218 0.45 -2.2
2,299,045 - ECD_02218 0.54 -0.4
2,299,045 - ECD_02218 0.54 -0.5
2,299,053 + ECD_02218 0.56 +0.8
2,299,364 - +0.5
2,299,423 + ECD_02219 0.14 +0.1
2,299,531 - ECD_02219 0.36 -1.0
2,299,531 - ECD_02219 0.36 -0.4
2,299,531 - ECD_02219 0.36 -1.0
2,299,642 - ECD_02219 0.59 -0.8
2,299,642 - ECD_02219 0.59 +0.4
2,299,642 - ECD_02219 0.59 +0.4
2,299,664 - ECD_02219 0.63 +0.4
2,299,722 - ECD_02219 0.75 -1.3
2,299,742 - ECD_02219 0.79 -0.6
2,299,789 + ECD_02219 0.88 -1.5
2,299,804 - +0.8
2,299,820 - -0.1
2,299,820 - +0.8
2,299,859 + -0.2
2,299,860 - +1.0
2,299,860 - +0.1
2,299,870 + -1.1
2,299,896 - +0.4
2,300,082 - ECD_02220 0.34 -0.4
2,300,214 - ECD_02220 0.62 +0.4
2,300,349 - +0.3
2,300,407 - -0.7
2,300,514 + +0.2
2,300,521 + +0.0
2,300,546 + +0.2
2,300,703 + +0.0

Or see this region's nucleotide sequence