Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02217 and ECD_02218 are separated by 86 nucleotides ECD_02218 and ECD_02219 are separated by 10 nucleotides ECD_02219 and ECD_02220 are separated by 82 nucleotides ECD_02220 and ECD_02221 are separated by 338 nucleotides
ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604
_02217
ECD_02218: ECD_02218 - sugar phosphatase, at 2,298,691 to 2,299,341
_02218
ECD_02219: ECD_02219 - UPF0304 family protein, at 2,299,352 to 2,299,846
_02219
ECD_02220: ECD_02220 - UPF0208 family inner membrane protein, at 2,299,929 to 2,300,384
_02220
ECD_02221: ECD_02221 - acetate kinase A and propionate kinase 2, at 2,300,723 to 2,301,925
_02221
Position (kb)
2299
2300 Strain fitness (log2 ratio)
-2
-1
0
1 at 2298.440 kb on - strand at 2298.440 kb on - strand at 2298.461 kb on + strand at 2298.461 kb on + strand at 2298.703 kb on - strand at 2298.732 kb on + strand at 2298.911 kb on + strand, within ECD_02218 at 2298.912 kb on - strand, within ECD_02218 at 2298.985 kb on + strand, within ECD_02218 at 2299.045 kb on - strand, within ECD_02218 at 2299.045 kb on - strand, within ECD_02218 at 2299.053 kb on + strand, within ECD_02218 at 2299.364 kb on - strand at 2299.423 kb on + strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.664 kb on - strand, within ECD_02219 at 2299.722 kb on - strand, within ECD_02219 at 2299.742 kb on - strand, within ECD_02219 at 2299.789 kb on + strand, within ECD_02219 at 2299.804 kb on - strand at 2299.820 kb on - strand at 2299.820 kb on - strand at 2299.859 kb on + strand at 2299.860 kb on - strand at 2299.860 kb on - strand at 2299.870 kb on + strand at 2299.896 kb on - strand at 2300.082 kb on - strand, within ECD_02220 at 2300.214 kb on - strand, within ECD_02220 at 2300.349 kb on - strand at 2300.407 kb on - strand at 2300.514 kb on + strand at 2300.521 kb on + strand at 2300.546 kb on + strand at 2300.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,298,440 - +0.8 2,298,440 - -0.9 2,298,461 + +1.2 2,298,461 + -0.0 2,298,703 - -0.3 2,298,732 + -0.2 2,298,911 + ECD_02218 0.34 -0.3 2,298,912 - ECD_02218 0.34 -0.1 2,298,985 + ECD_02218 0.45 -2.2 2,299,045 - ECD_02218 0.54 -0.4 2,299,045 - ECD_02218 0.54 -0.5 2,299,053 + ECD_02218 0.56 +0.8 2,299,364 - +0.5 2,299,423 + ECD_02219 0.14 +0.1 2,299,531 - ECD_02219 0.36 -1.0 2,299,531 - ECD_02219 0.36 -0.4 2,299,531 - ECD_02219 0.36 -1.0 2,299,642 - ECD_02219 0.59 -0.8 2,299,642 - ECD_02219 0.59 +0.4 2,299,642 - ECD_02219 0.59 +0.4 2,299,664 - ECD_02219 0.63 +0.4 2,299,722 - ECD_02219 0.75 -1.3 2,299,742 - ECD_02219 0.79 -0.6 2,299,789 + ECD_02219 0.88 -1.5 2,299,804 - +0.8 2,299,820 - -0.1 2,299,820 - +0.8 2,299,859 + -0.2 2,299,860 - +1.0 2,299,860 - +0.1 2,299,870 + -1.1 2,299,896 - +0.4 2,300,082 - ECD_02220 0.34 -0.4 2,300,214 - ECD_02220 0.62 +0.4 2,300,349 - +0.3 2,300,407 - -0.7 2,300,514 + +0.2 2,300,521 + +0.0 2,300,546 + +0.2 2,300,703 + +0.0
Or see this region's nucleotide sequence