Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02166 and ECD_02167 are separated by 272 nucleotides ECD_02167 and ECD_02168 overlap by 11 nucleotides
ECD_02166: ECD_02166 - sn-glycerol-3-phosphate transporter, at 2,241,385 to 2,242,743
_02166
ECD_02167: ECD_02167 - anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit, at 2,243,016 to 2,244,644
_02167
ECD_02168: ECD_02168 - anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit, at 2,244,634 to 2,245,893
_02168
Position (kb)
2243
2244
2245 Strain fitness (log2 ratio)
-2
-1
0
1 at 2242.170 kb on + strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.172 kb on + strand, within ECD_02166 at 2242.172 kb on + strand, within ECD_02166 at 2242.311 kb on + strand, within ECD_02166 at 2242.311 kb on + strand, within ECD_02166 at 2242.312 kb on - strand, within ECD_02166 at 2242.591 kb on - strand, within ECD_02166 at 2243.051 kb on + strand at 2243.051 kb on + strand at 2243.376 kb on - strand, within ECD_02167 at 2243.586 kb on - strand, within ECD_02167 at 2243.781 kb on - strand, within ECD_02167 at 2243.827 kb on + strand, within ECD_02167 at 2243.831 kb on + strand, within ECD_02167 at 2244.313 kb on + strand, within ECD_02167 at 2244.314 kb on - strand, within ECD_02167 at 2244.314 kb on - strand, within ECD_02167 at 2244.597 kb on + strand at 2244.654 kb on + strand at 2245.050 kb on - strand, within ECD_02168 at 2245.244 kb on + strand, within ECD_02168 at 2245.244 kb on + strand, within ECD_02168 at 2245.257 kb on + strand, within ECD_02168 at 2245.257 kb on + strand, within ECD_02168 at 2245.350 kb on - strand, within ECD_02168
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,242,170 + ECD_02166 0.58 +0.8 2,242,171 - ECD_02166 0.58 +1.2 2,242,171 - ECD_02166 0.58 -0.2 2,242,171 - ECD_02166 0.58 +1.4 2,242,172 + ECD_02166 0.58 -0.6 2,242,172 + ECD_02166 0.58 -1.1 2,242,311 + ECD_02166 0.68 +0.1 2,242,311 + ECD_02166 0.68 -2.1 2,242,312 - ECD_02166 0.68 -0.5 2,242,591 - ECD_02166 0.89 +0.5 2,243,051 + -0.1 2,243,051 + +0.4 2,243,376 - ECD_02167 0.22 -0.4 2,243,586 - ECD_02167 0.35 -0.4 2,243,781 - ECD_02167 0.47 +1.1 2,243,827 + ECD_02167 0.50 -1.0 2,243,831 + ECD_02167 0.50 +0.2 2,244,313 + ECD_02167 0.80 +0.0 2,244,314 - ECD_02167 0.80 -0.5 2,244,314 - ECD_02167 0.80 -1.2 2,244,597 + +0.2 2,244,654 + -0.1 2,245,050 - ECD_02168 0.33 +0.6 2,245,244 + ECD_02168 0.48 +0.4 2,245,244 + ECD_02168 0.48 -0.1 2,245,257 + ECD_02168 0.49 +1.4 2,245,257 + ECD_02168 0.49 +0.0 2,245,350 - ECD_02168 0.57 -0.1
Or see this region's nucleotide sequence