Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02154 and ECD_02155 overlap by 67 nucleotides ECD_02155 and ECD_02156 overlap by 4 nucleotides
ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763
_02154
ECD_02155: ECD_02155 - DUF1175 family protein, putative host defense protein, at 2,224,697 to 2,225,320
_02155
ECD_02156: ECD_02156 - DUF2138 family protein, putative host defense protein, at 2,225,317 to 2,227,005
_02156
Position (kb)
2224
2225
2226 Strain fitness (log2 ratio)
-1
0
1 at 2223.742 kb on + strand, within ECD_02154 at 2223.829 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2224.083 kb on - strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.253 kb on + strand, within ECD_02154 at 2224.275 kb on + strand, within ECD_02154 at 2224.382 kb on + strand at 2224.472 kb on + strand at 2224.845 kb on + strand, within ECD_02155 at 2224.931 kb on + strand, within ECD_02155 at 2224.960 kb on - strand, within ECD_02155 at 2225.216 kb on + strand, within ECD_02155 at 2225.432 kb on - strand at 2225.432 kb on - strand at 2225.529 kb on + strand, within ECD_02156 at 2225.531 kb on + strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156 at 2225.928 kb on - strand, within ECD_02156 at 2226.061 kb on - strand, within ECD_02156 at 2226.097 kb on + strand, within ECD_02156 at 2226.098 kb on - strand, within ECD_02156
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,223,742 + ECD_02154 0.78 +0.1 2,223,829 - ECD_02154 0.80 +0.1 2,223,831 - ECD_02154 0.80 -0.2 2,223,831 - ECD_02154 0.80 -0.1 2,224,083 - ECD_02154 0.85 -0.0 2,224,084 + ECD_02154 0.85 -0.2 2,224,084 + ECD_02154 0.85 +0.0 2,224,084 + ECD_02154 0.85 -0.4 2,224,084 + ECD_02154 0.85 +0.5 2,224,085 - ECD_02154 0.85 +0.1 2,224,085 - ECD_02154 0.85 +0.6 2,224,236 + ECD_02154 0.89 -0.5 2,224,236 + ECD_02154 0.89 -0.1 2,224,253 + ECD_02154 0.89 -0.2 2,224,275 + ECD_02154 0.89 +0.4 2,224,382 + -1.0 2,224,472 + -0.0 2,224,845 + ECD_02155 0.24 -0.0 2,224,931 + ECD_02155 0.38 +0.2 2,224,960 - ECD_02155 0.42 +1.5 2,225,216 + ECD_02155 0.83 +1.5 2,225,432 - +0.2 2,225,432 - +0.3 2,225,529 + ECD_02156 0.13 +0.4 2,225,531 + ECD_02156 0.13 +0.2 2,225,532 - ECD_02156 0.13 +0.5 2,225,532 - ECD_02156 0.13 +0.4 2,225,928 - ECD_02156 0.36 -0.4 2,226,061 - ECD_02156 0.44 +0.5 2,226,097 + ECD_02156 0.46 -0.5 2,226,098 - ECD_02156 0.46 -0.1
Or see this region's nucleotide sequence