Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02033 and ECD_02034 are separated by 46 nucleotides ECD_02034 and ECD_02035 are separated by 103 nucleotides ECD_02035 and ECD_02036 are separated by 193 nucleotides ECD_02036 and ECD_02037 are separated by 94 nucleotides
ECD_02033: ECD_02033 - hypothetical protein, at 2,083,419 to 2,083,664
_02033
ECD_02034: ECD_02034 - hypothetical protein, at 2,083,711 to 2,084,142
_02034
ECD_02035: ECD_02035 - hypothetical protein, at 2,084,246 to 2,084,911
_02035
ECD_02036: ECD_02036 - hypothetical protein, at 2,085,105 to 2,085,368
_02036
ECD_02037: ECD_02037 - hypothetical protein, at 2,085,463 to 2,085,714
_02037
Position (kb)
2084
2085 Strain fitness (log2 ratio)
-1
0
1
2 at 2083.418 kb on + strand at 2083.443 kb on + strand at 2083.443 kb on + strand at 2083.454 kb on + strand, within ECD_02033 at 2083.454 kb on + strand, within ECD_02033 at 2083.577 kb on + strand, within ECD_02033 at 2083.649 kb on + strand at 2083.681 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.828 kb on + strand, within ECD_02034 at 2084.018 kb on + strand, within ECD_02034 at 2084.141 kb on - strand at 2084.370 kb on + strand, within ECD_02035 at 2084.388 kb on + strand, within ECD_02035 at 2084.537 kb on + strand, within ECD_02035 at 2084.540 kb on - strand, within ECD_02035 at 2084.600 kb on - strand, within ECD_02035 at 2084.617 kb on - strand, within ECD_02035 at 2084.617 kb on - strand, within ECD_02035 at 2084.841 kb on - strand, within ECD_02035 at 2085.255 kb on - strand, within ECD_02036 at 2085.667 kb on + strand, within ECD_02037 at 2085.716 kb on + strand at 2085.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,083,418 + -0.2 2,083,443 + -0.3 2,083,443 + +0.1 2,083,454 + ECD_02033 0.14 -0.3 2,083,454 + ECD_02033 0.14 -0.6 2,083,577 + ECD_02033 0.64 +1.0 2,083,649 + -0.8 2,083,681 + -0.7 2,083,685 + +0.2 2,083,685 + +0.0 2,083,685 + +1.0 2,083,828 + ECD_02034 0.27 -0.2 2,084,018 + ECD_02034 0.71 -1.2 2,084,141 - +0.3 2,084,370 + ECD_02035 0.19 +0.0 2,084,388 + ECD_02035 0.21 +0.2 2,084,537 + ECD_02035 0.44 +1.8 2,084,540 - ECD_02035 0.44 +0.4 2,084,600 - ECD_02035 0.53 +1.2 2,084,617 - ECD_02035 0.56 +0.1 2,084,617 - ECD_02035 0.56 -1.3 2,084,841 - ECD_02035 0.89 -0.3 2,085,255 - ECD_02036 0.57 -0.3 2,085,667 + ECD_02037 0.81 -0.1 2,085,716 + +0.3 2,085,793 - -0.3
Or see this region's nucleotide sequence