Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01983 and ECD_01984 overlap by 4 nucleotides ECD_01984 and ECD_01985 are separated by 190 nucleotides ECD_01985 and ECD_01986 are separated by 145 nucleotides
ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200
_01983
ECD_01984: ECD_01984 - response regulator in two-component regulatory system with BaeS, at 2,063,197 to 2,063,919
_01984
ECD_01985: ECD_01985 - UPF0339 family protein, at 2,064,110 to 2,064,442
_01985
ECD_01986: ECD_01986 - putative peptidase, at 2,064,588 to 2,065,949
_01986
Position (kb)
2064
2065 Strain fitness (log2 ratio)
-1
0
1 at 2063.299 kb on + strand, within ECD_01984 at 2064.007 kb on - strand at 2064.068 kb on + strand at 2064.068 kb on + strand at 2064.359 kb on + strand, within ECD_01985 at 2064.441 kb on - strand at 2064.444 kb on + strand at 2064.502 kb on + strand at 2064.639 kb on + strand at 2064.869 kb on + strand, within ECD_01986 at 2064.870 kb on - strand, within ECD_01986 at 2064.890 kb on + strand, within ECD_01986 at 2064.891 kb on - strand, within ECD_01986 at 2065.131 kb on + strand, within ECD_01986 at 2065.188 kb on + strand, within ECD_01986 at 2065.189 kb on - strand, within ECD_01986 at 2065.232 kb on - strand, within ECD_01986 at 2065.338 kb on + strand, within ECD_01986 at 2065.339 kb on - strand, within ECD_01986 at 2065.371 kb on + strand, within ECD_01986 at 2065.412 kb on - strand, within ECD_01986
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,063,299 + ECD_01984 0.14 +0.7 2,064,007 - +0.7 2,064,068 + -0.6 2,064,068 + +1.5 2,064,359 + ECD_01985 0.75 +1.3 2,064,441 - +0.4 2,064,444 + +0.5 2,064,502 + +1.2 2,064,639 + +0.0 2,064,869 + ECD_01986 0.21 -0.5 2,064,870 - ECD_01986 0.21 +0.0 2,064,890 + ECD_01986 0.22 -0.6 2,064,891 - ECD_01986 0.22 -0.4 2,065,131 + ECD_01986 0.40 -0.5 2,065,188 + ECD_01986 0.44 +0.0 2,065,189 - ECD_01986 0.44 +0.1 2,065,232 - ECD_01986 0.47 +1.2 2,065,338 + ECD_01986 0.55 +0.3 2,065,339 - ECD_01986 0.55 -0.9 2,065,371 + ECD_01986 0.57 +0.5 2,065,412 - ECD_01986 0.60 -0.1
Or see this region's nucleotide sequence