Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01951 and ECD_01952 are separated by 161 nucleotides ECD_01952 and ECD_01953 are separated by 1 nucleotides
ECD_01951: ECD_01951 - colanic acid biosynthesis protein, at 2,016,156 to 2,017,436
_01951
ECD_01952: ECD_01952 - putative colanic acid exporter, at 2,017,598 to 2,019,076
_01952
ECD_01953: ECD_01953 - colanic biosynthesis UDP-glucose lipid carrier transferase, at 2,019,078 to 2,020,472
_01953
Position (kb)
2017
2018
2019
2020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2016.616 kb on + strand, within ECD_01951 at 2016.772 kb on + strand, within ECD_01951 at 2016.773 kb on - strand, within ECD_01951 at 2016.773 kb on - strand, within ECD_01951 at 2017.073 kb on + strand, within ECD_01951 at 2017.457 kb on + strand at 2017.458 kb on - strand at 2017.473 kb on + strand at 2017.592 kb on - strand at 2017.837 kb on - strand, within ECD_01952 at 2017.837 kb on - strand, within ECD_01952 at 2017.881 kb on + strand, within ECD_01952 at 2017.901 kb on - strand, within ECD_01952 at 2017.961 kb on - strand, within ECD_01952 at 2018.107 kb on + strand, within ECD_01952 at 2018.217 kb on + strand, within ECD_01952 at 2018.218 kb on - strand, within ECD_01952 at 2018.340 kb on + strand, within ECD_01952 at 2018.399 kb on - strand, within ECD_01952 at 2018.835 kb on + strand, within ECD_01952 at 2018.846 kb on - strand, within ECD_01952 at 2019.069 kb on - strand at 2019.230 kb on + strand, within ECD_01953 at 2019.281 kb on - strand, within ECD_01953 at 2019.914 kb on + strand, within ECD_01953
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,016,616 + ECD_01951 0.36 +1.0 2,016,772 + ECD_01951 0.48 +0.2 2,016,773 - ECD_01951 0.48 -0.4 2,016,773 - ECD_01951 0.48 +0.7 2,017,073 + ECD_01951 0.72 +0.0 2,017,457 + -0.9 2,017,458 - +0.4 2,017,473 + -0.2 2,017,592 - -0.1 2,017,837 - ECD_01952 0.16 +2.2 2,017,837 - ECD_01952 0.16 +0.5 2,017,881 + ECD_01952 0.19 +0.3 2,017,901 - ECD_01952 0.20 +0.6 2,017,961 - ECD_01952 0.25 +1.7 2,018,107 + ECD_01952 0.34 +0.9 2,018,217 + ECD_01952 0.42 +0.6 2,018,218 - ECD_01952 0.42 +0.7 2,018,340 + ECD_01952 0.50 -0.5 2,018,399 - ECD_01952 0.54 +0.0 2,018,835 + ECD_01952 0.84 -1.8 2,018,846 - ECD_01952 0.84 -0.2 2,019,069 - -1.5 2,019,230 + ECD_01953 0.11 -0.3 2,019,281 - ECD_01953 0.15 +0.1 2,019,914 + ECD_01953 0.60 -1.0
Or see this region's nucleotide sequence