Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01871 and ECD_01872 are separated by 463 nucleotides ECD_01872 and ECD_01873 are separated by 171 nucleotides ECD_01873 and ECD_01874 are separated by 37 nucleotides ECD_01874 and ECD_01875 are separated by 189 nucleotides
ECD_01871: ECD_01871 - DUF2766 family protein, at 1,932,649 to 1,932,900
_01871
ECD_01872: ECD_01872 - lipoprotein, function unknown, at 1,933,364 to 1,933,687
_01872
ECD_01873: ECD_01873 - ferritin iron storage protein (cytoplasmic), at 1,933,859 to 1,934,356
_01873
ECD_01874: ECD_01874 - DUF2492 family protein, at 1,934,394 to 1,934,633
_01874
ECD_01875: ECD_01875 - tyrosine transporter, at 1,934,823 to 1,936,034
_01875
Position (kb)
1933
1934
1935 Strain fitness (log2 ratio)
-1
0
1 at 1932.934 kb on + strand at 1932.935 kb on - strand at 1932.935 kb on - strand at 1933.066 kb on - strand at 1933.126 kb on - strand at 1933.395 kb on + strand at 1933.411 kb on + strand, within ECD_01872 at 1933.411 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.464 kb on + strand, within ECD_01872 at 1933.836 kb on + strand at 1933.960 kb on + strand, within ECD_01873 at 1934.058 kb on + strand, within ECD_01873 at 1934.065 kb on + strand, within ECD_01873 at 1934.225 kb on + strand, within ECD_01873 at 1934.601 kb on - strand, within ECD_01874 at 1934.773 kb on - strand at 1934.789 kb on - strand at 1934.927 kb on + strand at 1934.932 kb on + strand at 1935.080 kb on + strand, within ECD_01875 at 1935.080 kb on + strand, within ECD_01875 at 1935.096 kb on + strand, within ECD_01875 at 1935.114 kb on + strand, within ECD_01875 at 1935.167 kb on + strand, within ECD_01875
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,932,934 + -0.4 1,932,935 - -0.2 1,932,935 - +0.3 1,933,066 - -0.1 1,933,126 - +0.3 1,933,395 + +0.1 1,933,411 + ECD_01872 0.15 +0.9 1,933,411 + ECD_01872 0.15 -0.1 1,933,459 + ECD_01872 0.29 -1.1 1,933,459 + ECD_01872 0.29 +0.4 1,933,464 + ECD_01872 0.31 +0.6 1,933,836 + -0.1 1,933,960 + ECD_01873 0.20 -1.2 1,934,058 + ECD_01873 0.40 +0.6 1,934,065 + ECD_01873 0.41 -1.4 1,934,225 + ECD_01873 0.73 -0.0 1,934,601 - ECD_01874 0.86 +0.3 1,934,773 - -0.1 1,934,789 - -0.3 1,934,927 + +0.7 1,934,932 + -0.3 1,935,080 + ECD_01875 0.21 +1.1 1,935,080 + ECD_01875 0.21 -0.0 1,935,096 + ECD_01875 0.23 +0.3 1,935,114 + ECD_01875 0.24 -0.5 1,935,167 + ECD_01875 0.28 +0.5
Or see this region's nucleotide sequence