Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01861 and ECD_01862 are separated by 126 nucleotides ECD_01862 and ECD_01863 are separated by 2 nucleotides ECD_01863 and ECD_01864 are separated by 779 nucleotides
ECD_01861: ECD_01861 - proton conductor component of flagella motor, at 1,922,170 to 1,923,057
_01861
ECD_01862: ECD_01862 - flagellar class II regulon transcriptional activator, with FlhD, at 1,923,184 to 1,923,762
_01862
ECD_01863: ECD_01863 - flagellar class II regulon transcriptional activator, with FlhC, at 1,923,765 to 1,924,115
_01863
ECD_01864: ECD_01864 - universal stress protein, at 1,924,895 to 1,925,323
_01864
Position (kb) 1923
1924
1925 Strain fitness (log2 ratio) -1
0
1 at 1922.833 kb on - strand, within ECD_01861 at 1922.950 kb on - strand, within ECD_01861 at 1923.022 kb on - strand at 1923.043 kb on + strand at 1923.051 kb on + strand at 1923.051 kb on + strand at 1923.197 kb on - strand at 1923.468 kb on - strand, within ECD_01862 at 1924.063 kb on - strand, within ECD_01863
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,922,833 - ECD_01861 0.75 -0.5 1,922,950 - ECD_01861 0.88 -1.3 1,923,022 - -0.2 1,923,043 + +0.2 1,923,051 + -0.3 1,923,051 + +1.0 1,923,197 - -0.6 1,923,468 - ECD_01862 0.49 +1.2 1,924,063 - ECD_01863 0.85 +0.7
Or see this region's nucleotide sequence