Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01825 and ECD_01826 are separated by 130 nucleotides ECD_01826 and ECD_01827 are separated by 119 nucleotides
ECD_01825: ECD_01825 - pyruvate kinase II, at 1,883,373 to 1,884,815
_01825
ECD_01826: ECD_01826 - myristoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 1,884,946 to 1,885,917
_01826
ECD_01827: ECD_01827 - murein DD-endopeptidase, space-maker hydrolase, septation protein, at 1,886,037 to 1,887,359
_01827
Position (kb)
1884
1885
1886 Strain fitness (log2 ratio)
-1
0
1 at 1883.988 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825 at 1884.483 kb on + strand, within ECD_01825 at 1884.782 kb on + strand at 1884.789 kb on - strand at 1885.184 kb on - strand, within ECD_01826 at 1885.241 kb on + strand, within ECD_01826 at 1885.301 kb on + strand, within ECD_01826 at 1885.302 kb on - strand, within ECD_01826 at 1885.406 kb on + strand, within ECD_01826 at 1885.407 kb on - strand, within ECD_01826 at 1885.964 kb on - strand at 1886.035 kb on - strand at 1886.161 kb on - strand at 1886.167 kb on - strand at 1886.167 kb on - strand at 1886.167 kb on - strand at 1886.280 kb on - strand, within ECD_01827 at 1886.281 kb on + strand, within ECD_01827 at 1886.294 kb on - strand, within ECD_01827 at 1886.321 kb on - strand, within ECD_01827 at 1886.321 kb on - strand, within ECD_01827 at 1886.478 kb on - strand, within ECD_01827 at 1886.573 kb on - strand, within ECD_01827 at 1886.656 kb on - strand, within ECD_01827 at 1886.862 kb on - strand, within ECD_01827 at 1886.869 kb on + strand, within ECD_01827
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,883,988 + ECD_01825 0.43 +0.7 1,884,245 + ECD_01825 0.60 +1.1 1,884,245 + ECD_01825 0.60 -1.2 1,884,483 + ECD_01825 0.77 +1.1 1,884,782 + +0.6 1,884,789 - +0.1 1,885,184 - ECD_01826 0.24 -1.5 1,885,241 + ECD_01826 0.30 -1.7 1,885,301 + ECD_01826 0.37 +1.1 1,885,302 - ECD_01826 0.37 -0.8 1,885,406 + ECD_01826 0.47 -0.3 1,885,407 - ECD_01826 0.47 +1.1 1,885,964 - -0.4 1,886,035 - -0.6 1,886,161 - +1.2 1,886,167 - -0.5 1,886,167 - -0.0 1,886,167 - +0.6 1,886,280 - ECD_01827 0.18 +0.0 1,886,281 + ECD_01827 0.18 +0.1 1,886,294 - ECD_01827 0.19 +0.2 1,886,321 - ECD_01827 0.21 +0.4 1,886,321 - ECD_01827 0.21 -0.0 1,886,478 - ECD_01827 0.33 -0.1 1,886,573 - ECD_01827 0.41 -0.2 1,886,656 - ECD_01827 0.47 +0.5 1,886,862 - ECD_01827 0.62 +0.1 1,886,869 + ECD_01827 0.63 +0.9
Or see this region's nucleotide sequence