Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01811 and ECD_01812 are separated by 3 nucleotides ECD_01812 and ECD_01813 are separated by 138 nucleotides ECD_01813 and ECD_01814 are separated by 101 nucleotides ECD_01814 and ECD_01815 are separated by 23 nucleotides ECD_01815 and ECD_01816 overlap by 4 nucleotides
ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315
_01811
ECD_01812: ECD_01812 - CopC family protein, at 1,870,319 to 1,870,693
_01812
ECD_01813: ECD_01813 - DNA polymerase III, theta subunit, at 1,870,832 to 1,871,062
_01813
ECD_01814: ECD_01814 - C-N hydrolase family protein, at 1,871,164 to 1,871,820
_01814
ECD_01815: ECD_01815 - exodeoxyribonuclease 10; DNA exonuclease X, at 1,871,844 to 1,872,506
_01815
ECD_01816: ECD_01816 - protease II, at 1,872,503 to 1,874,563
_01816
Position (kb) 1871
1872 Strain fitness (log2 ratio) -1
0
1
2 at 1870.320 kb on + strand at 1870.393 kb on - strand, within ECD_01812 at 1870.545 kb on - strand, within ECD_01812 at 1870.694 kb on - strand at 1870.697 kb on - strand at 1870.697 kb on - strand at 1870.734 kb on - strand at 1870.744 kb on - strand at 1870.796 kb on - strand at 1871.428 kb on - strand, within ECD_01814 at 1871.428 kb on - strand, within ECD_01814 at 1871.700 kb on + strand, within ECD_01814 at 1871.969 kb on + strand, within ECD_01815 at 1871.969 kb on + strand, within ECD_01815 at 1871.972 kb on + strand, within ECD_01815 at 1872.054 kb on + strand, within ECD_01815 at 1872.072 kb on + strand, within ECD_01815 at 1872.072 kb on + strand, within ECD_01815 at 1872.073 kb on - strand, within ECD_01815 at 1872.255 kb on + strand, within ECD_01815 at 1872.266 kb on + strand, within ECD_01815 at 1872.266 kb on + strand, within ECD_01815 at 1872.293 kb on + strand, within ECD_01815 at 1872.294 kb on - strand, within ECD_01815 at 1872.732 kb on - strand, within ECD_01816 at 1872.772 kb on - strand, within ECD_01816
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,870,320 + +0.0 1,870,393 - ECD_01812 0.20 +0.5 1,870,545 - ECD_01812 0.60 -0.0 1,870,694 - +0.9 1,870,697 - +0.3 1,870,697 - -0.8 1,870,734 - +0.9 1,870,744 - -0.2 1,870,796 - +0.8 1,871,428 - ECD_01814 0.40 -0.8 1,871,428 - ECD_01814 0.40 -0.6 1,871,700 + ECD_01814 0.82 -0.2 1,871,969 + ECD_01815 0.19 -0.2 1,871,969 + ECD_01815 0.19 +2.4 1,871,972 + ECD_01815 0.19 +1.0 1,872,054 + ECD_01815 0.32 -0.3 1,872,072 + ECD_01815 0.34 +0.6 1,872,072 + ECD_01815 0.34 +0.1 1,872,073 - ECD_01815 0.35 -0.4 1,872,255 + ECD_01815 0.62 -0.3 1,872,266 + ECD_01815 0.64 -0.3 1,872,266 + ECD_01815 0.64 +0.3 1,872,293 + ECD_01815 0.68 +0.9 1,872,294 - ECD_01815 0.68 +0.8 1,872,732 - ECD_01816 0.11 +1.6 1,872,772 - ECD_01816 0.13 +0.7
Or see this region's nucleotide sequence