Strain Fitness in Escherichia coli BL21 around ECD_01774

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01773 and ECD_01774 are separated by 53 nucleotidesECD_01774 and ECD_01775 are separated by 69 nucleotides ECD_01773: ECD_01773 - putative YeaWX dioxygenase beta subunit, reductase component, at 1,831,571 to 1,832,536 _01773 ECD_01774: ECD_01774 - ribonuclease D, at 1,832,590 to 1,833,717 _01774 ECD_01775: ECD_01775 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase), at 1,833,787 to 1,835,472 _01775 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1at 1831.596 kb on + strandat 1831.750 kb on - strand, within ECD_01773at 1831.999 kb on - strand, within ECD_01773at 1832.376 kb on + strand, within ECD_01773at 1832.482 kb on + strandat 1833.220 kb on - strand, within ECD_01774at 1833.557 kb on - strand, within ECD_01774at 1834.034 kb on - strand, within ECD_01775at 1834.084 kb on - strand, within ECD_01775at 1834.201 kb on - strand, within ECD_01775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
1,831,596 + -0.2
1,831,750 - ECD_01773 0.19 -1.4
1,831,999 - ECD_01773 0.44 +0.1
1,832,376 + ECD_01773 0.83 -0.4
1,832,482 + +1.3
1,833,220 - ECD_01774 0.56 -0.9
1,833,557 - ECD_01774 0.86 +0.3
1,834,034 - ECD_01775 0.15 +0.6
1,834,084 - ECD_01775 0.18 -0.1
1,834,201 - ECD_01775 0.25 -0.4

Or see this region's nucleotide sequence