Strain Fitness in Escherichia coli BL21 around ECD_01679

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01677 and ECD_01678 are separated by 77 nucleotidesECD_01678 and ECD_01679 overlap by 1 nucleotidesECD_01679 and ECD_01680 are separated by 62 nucleotides ECD_01677: ECD_01677 - putative C40 clan peptidase lipoprotein, at 1,736,682 to 1,737,146 _01677 ECD_01678: ECD_01678 - vitamin B12 ABC transporter ATPase, at 1,737,224 to 1,737,973 _01678 ECD_01679: ECD_01679 - glutathione peroxidase, at 1,737,973 to 1,738,524 _01679 ECD_01680: ECD_01680 - vitamin B12 ABC transporter permease, at 1,738,587 to 1,739,567 _01680 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -1 0 1at 1737.570 kb on - strand, within ECD_01678at 1738.228 kb on - strand, within ECD_01679at 1738.398 kb on - strand, within ECD_01679at 1738.633 kb on - strandat 1739.379 kb on + strand, within ECD_01680

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,737,570 - ECD_01678 0.46 -0.4
1,738,228 - ECD_01679 0.46 -0.6
1,738,398 - ECD_01679 0.77 -1.0
1,738,633 - +0.4
1,739,379 + ECD_01680 0.81 +0.3

Or see this region's nucleotide sequence