Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01627 and ECD_01628 are separated by 165 nucleotides ECD_01628 and ECD_01629 are separated by 268 nucleotides ECD_01629 and ECD_01630 overlap by 4 nucleotides
ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559
_01627
ECD_01628: ECD_01628 - putative transporter, at 1,682,725 to 1,682,844
_01628
ECD_01629: ECD_01629 - transcriptional repressor, hypoxanthine-binding, at 1,683,113 to 1,684,138
_01629
ECD_01630: ECD_01630 - LysR family putative transcriptional regulator, at 1,684,135 to 1,685,067
_01630
Position (kb) 1683
1684
1685 Strain fitness (log2 ratio) -1
0
1 at 1682.283 kb on - strand, within ECD_01627 at 1682.958 kb on + strand at 1682.963 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.157 kb on + strand at 1683.712 kb on + strand, within ECD_01629 at 1683.712 kb on + strand, within ECD_01629 at 1684.504 kb on - strand, within ECD_01630 at 1684.504 kb on - strand, within ECD_01630 at 1684.750 kb on - strand, within ECD_01630
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,682,283 - ECD_01627 0.76 +0.4 1,682,958 + +0.9 1,682,963 + -0.2 1,683,132 + -0.8 1,683,132 + +0.2 1,683,132 + +0.9 1,683,157 + -0.4 1,683,712 + ECD_01629 0.58 -1.2 1,683,712 + ECD_01629 0.58 -0.8 1,684,504 - ECD_01630 0.40 -0.4 1,684,504 - ECD_01630 0.40 +0.3 1,684,750 - ECD_01630 0.66 -0.3
Or see this region's nucleotide sequence