Strain Fitness in Escherichia coli BL21 around ECD_01584

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01583 and ECD_01584 are separated by 225 nucleotidesECD_01584 and ECD_01585 are separated by 38 nucleotides ECD_01583: ECD_01583 - DUF945 family protein, at 1,635,049 to 1,636,557 _01583 ECD_01584: ECD_01584 - putative outer membrane porin for beta-glucuronides porin protein, at 1,636,783 to 1,638,048 _01584 ECD_01585: ECD_01585 - glucuronide transporter, at 1,638,087 to 1,639,460 _01585 Position (kb) 1636 1637 1638 1639Strain fitness (log2 ratio) -1 0 1at 1636.463 kb on + strandat 1636.946 kb on - strand, within ECD_01584at 1637.177 kb on - strand, within ECD_01584at 1637.177 kb on - strand, within ECD_01584at 1637.302 kb on - strand, within ECD_01584at 1637.602 kb on - strand, within ECD_01584

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,636,463 + -1.2
1,636,946 - ECD_01584 0.13 -0.3
1,637,177 - ECD_01584 0.31 -0.9
1,637,177 - ECD_01584 0.31 -0.9
1,637,302 - ECD_01584 0.41 -1.3
1,637,602 - ECD_01584 0.65 +0.6

Or see this region's nucleotide sequence