Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01528 and ECD_01529 are separated by 14 nucleotides ECD_01529 and ECD_01530 are separated by 73 nucleotides ECD_01530 and ECD_01531 are separated by 66 nucleotides ECD_01531 and ECD_01532 are separated by 216 nucleotides ECD_01532 and ECD_01533 are separated by 211 nucleotides ECD_01533 and ECD_01535 overlap by 40 nucleotides
ECD_01528: ECD_01528 - antitermination protein Q-like protein from lambdoid prophage DLP12, at 1,589,208 to 1,589,588
_01528
ECD_01529: ECD_01529 - Qin prophage; uncharacterized protein, at 1,589,603 to 1,590,181
_01529
ECD_01530: ECD_01530 - hypothetical protein, at 1,590,255 to 1,590,533
_01530
ECD_01531: ECD_01531 - Qin prophage; uncharacterized protein, at 1,590,600 to 1,590,851
_01531
ECD_01532: ECD_01532 - Qin prophage; small toxic polypeptide, at 1,591,068 to 1,591,223
_01532
ECD_01533: ECD_01533 - hypothetical protein, at 1,591,435 to 1,591,524
_01533
ECD_01535: ECD_01535 - hypothetical protein, at 1,591,485 to 1,591,844
_01535
Position (kb) 1590
1591 Strain fitness (log2 ratio) -1
0
1 at 1589.853 kb on + strand, within ECD_01529 at 1589.854 kb on - strand, within ECD_01529 at 1590.756 kb on - strand, within ECD_01531 at 1591.201 kb on - strand, within ECD_01532 at 1591.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,589,853 + ECD_01529 0.43 +0.8 1,589,854 - ECD_01529 0.43 +0.1 1,590,756 - ECD_01531 0.62 +0.8 1,591,201 - ECD_01532 0.85 +1.5 1,591,408 - -0.4
Or see this region's nucleotide sequence