Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01489 and ECD_01490 are separated by 19 nucleotides ECD_01490 and ECD_01491 are separated by 31 nucleotides ECD_01491 and ECD_01492 are separated by 30 nucleotides ECD_01492 and ECD_01493 are separated by 194 nucleotides
ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850
_01489
ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253
_01490
ECD_01491: ECD_01491 - periplasmic mar operon regulator, at 1,569,285 to 1,569,503
_01491
ECD_01492: ECD_01492 - cysteine and O-acetyl-L-serine efflux system, at 1,569,534 to 1,570,433
_01492
ECD_01493: ECD_01493 - putative transporter, at 1,570,628 to 1,571,815
_01493
Position (kb)
1569
1570
1571 Strain fitness (log2 ratio)
-2
-1
0
1 at 1568.577 kb on + strand, within ECD_01489 at 1568.634 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.735 kb on + strand, within ECD_01489 at 1569.038 kb on + strand, within ECD_01490 at 1569.483 kb on + strand at 1569.484 kb on - strand at 1569.484 kb on - strand at 1569.486 kb on - strand at 1569.536 kb on - strand at 1569.587 kb on - strand at 1569.652 kb on - strand, within ECD_01492 at 1569.719 kb on - strand, within ECD_01492 at 1569.804 kb on - strand, within ECD_01492 at 1569.975 kb on - strand, within ECD_01492 at 1570.601 kb on + strand at 1570.635 kb on + strand at 1570.725 kb on - strand at 1570.888 kb on + strand, within ECD_01493
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,568,577 + ECD_01489 0.37 -0.4 1,568,634 + ECD_01489 0.50 -1.6 1,568,715 + ECD_01489 0.69 +0.1 1,568,715 + ECD_01489 0.69 -0.9 1,568,735 + ECD_01489 0.73 +0.3 1,569,038 + ECD_01490 0.44 -0.4 1,569,483 + -0.4 1,569,484 - -1.6 1,569,484 - +0.0 1,569,486 - -0.1 1,569,536 - +0.3 1,569,587 - -2.3 1,569,652 - ECD_01492 0.13 -0.4 1,569,719 - ECD_01492 0.21 -0.5 1,569,804 - ECD_01492 0.30 -0.9 1,569,975 - ECD_01492 0.49 -0.8 1,570,601 + -1.4 1,570,635 + -0.3 1,570,725 - +0.3 1,570,888 + ECD_01493 0.22 -1.4
Or see this region's nucleotide sequence